PDB entry 4dmr

View 4dmr on RCSB PDB site
Description: reduced dmso reductase from rhodobacter capsulatus with bound dmso substrate
Class: oxidoreductase
Keywords: oxidoreductase, dmso, molybdopterin, substrate bound
Deposited on 1997-04-30, released 1998-03-18
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.16
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dmso reductase
    Species: Rhodobacter capsulatus [TaxId:1061]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q52675 (Start-822)
      • differences in map (80)
      • differences in map (84)
      • conflict (148)
      • differences in map (275)
      • differences in map (277)
      • differences in map (321)
      • differences in map (335-336)
      • differences in map (353)
      • conflict (415)
      • differences in map (497)
      • conflict (567)
      • missing from gb (593)
      • conflict (596)
    Domains in SCOPe 2.07: d4dmra1, d4dmra2
  • Heterogens: PGD, 4MO, O, DMS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dmrA (A:)
mtkfsgnelraelyrraflsysvapgalgmfgrsllakgaraealangtvmsgshwgvft
atvengrataftpwekdphpspmlagvldsiysptrikypmvrreflekgvnadrstrgn
gdfvrvswdqaldlvaaevkrveetygpsgvfggsygwkspgrlhncttllrrmltlagg
yvngagdystgaaqvimphvvgtlevyeqqtawpvlaentevmvfwaadpiktsqigwvi
pehgaypglealkakgtkvividpvrtktveffgaehitpkpqtdvaimlgmahtlvaed
lydkdfianytsgfdkflpyldgetdstpktaewaegisgvpaetikelarlfeskrtml
aagwsmqrmhhgeqahwmlvtlasmlgqiglpgggfglsyhysgggtpstsgpalagitd
ggaatkgpewlaasgasvipvarvvdmlenpgaefdfngtrskfpdvkmaywvggnpfvh
hqdrnrmvkawekletfvvhdfqwtptarhadivlpattsyerndietigdysntgilam
kkiveplyearsdydifaavaerlgkgaeftegkdemgwiksfyddaakqgkaagvqmpa
fdafwaegivefpvtdgadfvryasfredpllnplgtptglieiyskniekmgyddcpah
ptwmeplerldgpgakyplhiaashpfnrlhsqlngtvlregyavqghepclmhpddaaa
rgiadgdvvrvhndrgqiltgvkvtdavmkgviqiyeggwydpsdvtepgtldkygdvnv
lsadigtsklaqgncgqtvlaevekytgpavtltgfvapkaae

    Sequence, based on observed residues (ATOM records): (download) 
    >4dmrA (A:)
langtvmsgshwgvftatvengrataftpwekdphpspmlagvldsiysptrikypmvrr
eflekgvnadrstrgngdfvrvswdqaldlvaaevkrveetygpsgvfggsygwkspgrl
hncttllrrmltlaggyvngagdystgaaqvimphvvgtlevyeqqtawpvlaentevmv
fwaadpiktsqigwvipehgaypglealkakgtkvividpvrtktveffgaehitpkpqt
dvaimlgmahtlvaedlydkdfianytsgfdkflpyldgetdstpktaewaegisgvpae
tikelarlfeskrtmlaagwsmqrmhhgeqahwmlvtlasmlgqiglpgggfglsyhysg
ggtpstsgpalagitdggkgpewlaasvipvarvvdmlenpgaefdfngtrskfpdvkma
ywvggnpfvhhqdrnrmvkawekletfvvhdfqwtptarhadivlpattsyerndietig
dysntgilamkkiveplyearsdydifaavaerlgkgaeftegkdemgwiksfyddaakq
gkaagvqmpafdafwaegivefpvtdgadfvryasfredpllnplgtptglieiysknie
kmgyddcpahptwmeplerldgpgakyplhiaashpfnrlhsqlngtvlregyavqghep
clmhpddaaargiadgdvvrvhndrgqiltgvkvtdavmkgviqiyeggwydpsdvtepg
tldkygdvnvlsadigtsklaqgncgqtvlaevekytgpavtltgfvapkaae