PDB entry 4dm6
View 4dm6 on RCSB PDB site
Description: Crystal structure of RARb LBD homodimer in complex with TTNPB
Class: TRANSCRIPTION/protein binding
Keywords: TRANSCRIPTION, NUCLEAR RECEPTOR, RETINOIC ACID, ALPHA HELICAL SANDWICH, TRANSCRIPTION REGULATOR, RETINOIC ACID BINDING, NUCLEUS - CYTOPLASM, TRANSCRIPTION-protein binding complex
Deposited on
2012-02-07, released
2012-03-07
The last revision prior to the SCOPe 2.06 freeze date was dated
2012-05-16, with a file datestamp of
2012-05-11.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.206
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Retinoic acid receptor beta
Species: Homo sapiens [TaxId:9606]
Gene: RARB, HAP, NR1B2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4dm6a1, d4dm6a2 - Chain 'B':
Compound: Retinoic acid receptor beta
Species: Homo sapiens [TaxId:9606]
Gene: RARB, HAP, NR1B2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d4dm6b_ - Chain 'E':
Compound: Nuclear receptor coactivator 1
Species: HOMO SAPIENS, synthetic [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: Nuclear receptor coactivator 1
Species: HOMO SAPIENS, synthetic [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Heterogens: TTB, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4dm6A (A:)
mgsshhhhhhssglvprgshmesyemtaelddltekirkahqetfpslcqlgkyttnssa
dhrvrldlglwdkfselatkciikivefakrlpgftgltiadqitllkaacldililric
trytpeqdtmtfsdgltlnrtqmhnagfgpltdlvftfanqllplemddtetgllsaicl
icgdrqdleeptkvdklqepllealkiyirkrrpskphmfpkilmkitdlrsisakgaer
vitlkmeipgsmppliqemlenseghe
Sequence, based on observed residues (ATOM records): (download)
>4dm6A (A:)
esyemtaelddltekirkahqetfpslcqlgkyttnssadhrvrldlglwdkfselatkc
iikivefakrlpgftgltiadqitllkaacldililrictrytpeqdtmtfsdgltlnrt
qmhnagfgpltdlvftfanqllplemddtetgllsaiclicgdrqdleeptkvdklqepl
lealkiyirkrrpskphmfpkilmkitdlrsisakgaervitlkmeipgsmppliqemle
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4dm6B (B:)
mgsshhhhhhssglvprgshmesyemtaelddltekirkahqetfpslcqlgkyttnssa
dhrvrldlglwdkfselatkciikivefakrlpgftgltiadqitllkaacldililric
trytpeqdtmtfsdgltlnrtqmhnagfgpltdlvftfanqllplemddtetgllsaicl
icgdrqdleeptkvdklqepllealkiyirkrrpskphmfpkilmkitdlrsisakgaer
vitlkmeipgsmppliqemlenseghe
Sequence, based on observed residues (ATOM records): (download)
>4dm6B (B:)
yemtaelddltekirkahqetfpslcqlgkyttnssadhrvrldlglwdkfselatkcii
kivefakrlpgftgltiadqitllkaacldililrictrytpeqdtmtfsdgltlnrtqm
hnagfgpltdlvftfanqllplemddtetgllsaiclicgdrqdleeptkvdklqeplle
alkiyirkrrpskphmfpkilmkitdlrsisakgaervitlkmeipgsmppliqemlen
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.