PDB entry 4dk9

View 4dk9 on RCSB PDB site
Description: Crystal Structure of MBD4 Catalytic Domain Bound to Abasic DNA
Class: hydrolase/DNA
Keywords: protein-DNA complex, HYDROLASE-DNA complex
Deposited on 2012-02-03, released 2012-04-25
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-07-25, with a file datestamp of 2012-07-20.
Experiment type: XRAY
Resolution: 2.76 Å
R-factor: 0.234
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Methyl-CpG-binding domain protein 4
    Species: Homo sapiens [TaxId:9606]
    Gene: MBD4, MED1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4dk9a_
  • Chain 'B':
    Compound: 5'-d(*ap*ap*gp*ap*cp*gp*tp*gp*gp*ap*c)-3'
  • Chain 'C':
    Compound: 5'-d(*tp*gp*tp*cp*cp*ap*(3dr)p*gp*tp*cp*t)-3'
  • Heterogens: K, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dk9A (A:)
gsalspprrkafkkwtpprspfnlvqetlfhdpwklliatiflnrtsgkmaipvlwkfle
kypsaevartadwrdvsellkplglydlraktivkfsdeyltkqwkypielhgigkygnd
syrifcvnewkqvhpedhklnkyhdwlwenheklsls

    Sequence, based on observed residues (ATOM records): (download) 
    >4dk9A (A:)
wtpprspfnlvqetlfhdpwklliatiflnrtsgkmaipvlwkflekypsaevartadwr
dvsellkplglydlraktivkfsdeyltkqwkypielhgigkygndsyrifcvnewkqvh
pedhklnkyhdwlwenhekl

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.