PDB entry 4dj8

View 4dj8 on RCSB PDB site
Description: Structure of the hemagglutinin complexed with 6SLN from a highly pathogenic H7N7 influenza virus
Class: viral protein
Keywords: receptor binding, glycoprotein, VIRAL PROTEIN
Deposited on 2012-02-01, released 2012-06-20
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-01-02, with a file datestamp of 2012-12-28.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.193
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/Netherlands/219/2003(H7N7)) [TaxId:680693]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4dj8a_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/Netherlands/219/2003(H7N7)) [TaxId:680693]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4dj8b_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/Netherlands/219/2003(H7N7)) [TaxId:680693]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4dj8c_
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/Netherlands/219/2003(H7N7)) [TaxId:680693]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4dj8d_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/Netherlands/219/2003(H7N7)) [TaxId:680693]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6VMK1 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.05: d4dj8e_
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/Netherlands/219/2003(H7N7)) [TaxId:680693]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4dj8f_
  • Heterogens: NAG, SIA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dj8A (A:)
adpgdkiclghhavsngtkvntltergvevvnatetvertnvpricskgkrtvdlgqcgl
lgtitgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidketmgft
ysgirtngttsacrrsgssfyaemkwllsntdnaafpqmtksykntrkdpaliiwgihhs
gstteqtklygsgnklitvgssnyqqsfvpspgarpqvngqsgridfhwlilnpndtvtf
sfngafiapdrasflrgksmgiqsevqvdancegdcyhsggtiisnlpfqninsravgkc
pryvkqeslllatgmknvpeipkrrrr

    Sequence, based on observed residues (ATOM records): (download) 
    >4dj8A (A:)
dkiclghhavsngtkvntltergvevvnatetvertnvpricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidketmgftysgi
rtngttsacrrsgssfyaemkwllsntdnaafpqmtksykntrkdpaliiwgihhsgstt
eqtklygsgnklitvgssnyqqsfvpspgarpqvngqsgridfhwlilnpndtvtfsfng
afiapdrasflrgksmgiqsevqvdancegdcyhsggtiisnlpfqninsravgkcpryv
kqeslllatgmknvpe

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4dj8B (B:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefteverqignvinwtrdsmtevwsynaellvamenqhtidladsemnklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeaiqnriqidsgr

    Sequence, based on observed residues (ATOM records): (download) 
    >4dj8B (B:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefteverqignvinwtrdsmtevwsynaellvamenqhtidladsemnklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeaiqnr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4dj8C (C:)
adpgdkiclghhavsngtkvntltergvevvnatetvertnvpricskgkrtvdlgqcgl
lgtitgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidketmgft
ysgirtngttsacrrsgssfyaemkwllsntdnaafpqmtksykntrkdpaliiwgihhs
gstteqtklygsgnklitvgssnyqqsfvpspgarpqvngqsgridfhwlilnpndtvtf
sfngafiapdrasflrgksmgiqsevqvdancegdcyhsggtiisnlpfqninsravgkc
pryvkqeslllatgmknvpeipkrrrr

    Sequence, based on observed residues (ATOM records): (download) 
    >4dj8C (C:)
dkiclghhavsngtkvntltergvevvnatetvertnvpricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidketmgftysgi
rtngttsacrrsgssfyaemkwllsntdnaafpqmtksykntrkdpaliiwgihhsgstt
eqtklygsgnklitvgssnyqqsfvpspgarpqvngqsgridfhwlilnpndtvtfsfng
afiapdrasflrgksmgiqsevqvdancegdcyhsggtiisnlpfqninsravgkcpryv
kqeslllatgmknvpe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4dj8D (D:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefteverqignvinwtrdsmtevwsynaellvamenqhtidladsemnklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeaiqnriqidsgr

    Sequence, based on observed residues (ATOM records): (download) 
    >4dj8D (D:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefteverqignvinwtrdsmtevwsynaellvamenqhtidladsemnklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeaiqnri

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4dj8E (E:)
adpgdkiclghhavsngtkvntltergvevvnatetvertnvpricskgkrtvdlgqcgl
lgtitgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidketmgft
ysgirtngttsacrrsgssfyaemkwllsntdnaafpqmtksykntrkdpaliiwgihhs
gstteqtklygsgnklitvgssnyqqsfvpspgarpqvngqsgridfhwlilnpndtvtf
sfngafiapdrasflrgksmgiqsevqvdancegdcyhsggtiisnlpfqninsravgkc
pryvkqeslllatgmknvpeipkrrrr

    Sequence, based on observed residues (ATOM records): (download) 
    >4dj8E (E:)
gdkiclghhavsngtkvntltergvevvnatetvertnvpricskgkrtvdlgqcgllgt
itgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidketmgftysg
irtngttsacrrsgssfyaemkwllsntdnaafpqmtksykntrkdpaliiwgihhsgst
teqtklygsgnklitvgssnyqqsfvpspgarpqvngqsgridfhwlilnpndtvtfsfn
gafiapdrasflrgksmgiqsevqvdancegdcyhsggtiisnlpfqninsravgkcpry
vkqeslllatgmknvpe

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4dj8F (F:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefteverqignvinwtrdsmtevwsynaellvamenqhtidladsemnklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeaiqnriqidsgr

    Sequence, based on observed residues (ATOM records): (download) 
    >4dj8F (F:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefteverqignvinwtrdsmtevwsynaellvamenqhtidladsemnklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeaiqn