PDB entry 4die
View 4die on RCSB PDB site
Description: Crystal structure of a cytidylate kinase CmK from Mycobacterium abscessus bound to cytidine-5'-monophosphate
Class: transferase
Keywords: Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, kinase, Mycobacterium, Cytidine monophosphate kinase, CK, TRANSFERASE
Deposited on
2012-01-30, released
2012-02-08
The last revision prior to the SCOPe 2.05 freeze date was dated
2012-02-08, with a file datestamp of
2012-02-03.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: 0.233
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Cytidylate kinase
Species: Mycobacterium abscessus [TaxId:561007]
Gene: cmk, MAB_2371
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4diea_ - Chain 'B':
Compound: Cytidylate kinase
Species: Mycobacterium abscessus [TaxId:561007]
Gene: cmk, MAB_2371
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4dieb_ - Chain 'C':
Compound: Cytidylate kinase
Species: Mycobacterium abscessus [TaxId:561007]
Gene: cmk, MAB_2371
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4diec_ - Chain 'D':
Compound: Cytidylate kinase
Species: Mycobacterium abscessus [TaxId:561007]
Gene: cmk, MAB_2371
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4died_ - Heterogens: C5P, PO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4dieA (A:)
gpgsmvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaia
aatdqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrela
essgavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvsgggddeyekvladvqr
rdhldstravsplrpaedalevdtsdmtqeqvvahlldlvrtragasr
Sequence, based on observed residues (ATOM records): (download)
>4dieA (A:)
smvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaiaaat
dqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrelaess
gavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvladvqrrdhldstrlrpaed
alevdtsdmtqeqvvahlldlvrt
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4dieB (B:)
gpgsmvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaia
aatdqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrela
essgavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvsgggddeyekvladvqr
rdhldstravsplrpaedalevdtsdmtqeqvvahlldlvrtragasr
Sequence, based on observed residues (ATOM records): (download)
>4dieB (B:)
smvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaiaaat
dqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrelaess
gavvvegrdigtvvlpdadvkiyltasaqaraqrrnqrrdhldstravsplrpaedalev
dtsdmtqeqvvahlldlvrtr
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4dieC (C:)
gpgsmvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaia
aatdqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrela
essgavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvsgggddeyekvladvqr
rdhldstravsplrpaedalevdtsdmtqeqvvahlldlvrtragasr
Sequence, based on observed residues (ATOM records): (download)
>4dieC (C:)
smvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaiaaat
dqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrelaess
gavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvsekvladvqrrdhldstrav
splrpaedalevdtsdmtqeqvvahlldlvrtr
- Chain 'D':
Sequence, based on SEQRES records: (download)
>4dieD (D:)
gpgsmvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaia
aatdqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrela
essgavvvegrdigtvvlpdadvkiyltasaqaraqrrnaqnvsgggddeyekvladvqr
rdhldstravsplrpaedalevdtsdmtqeqvvahlldlvrtragasr
Sequence, based on observed residues (ATOM records): (download)
>4dieD (D:)
smvvavdgpsgtgkssvakelarqlgasyldtgamyrivtlwvlragvdltdpaaiaaat
dqvpmsvssdpdaqtallagedvsvpirgnevtgavsavsavpavrerlvrqqrelaess
gavvvegrdigtvvlpdadvkiyltasaqaraqrvqrrdhldstravsplrpaedalevd
tsdmtqeqvvahlldlvrtr