PDB entry 4dgt

View 4dgt on RCSB PDB site
Description: Crystal structure of PLP-bound putative aminotransferase from Clostridium difficile 630 crystallized with magnesium formate
Class: transferase
Keywords: Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, internal aldimine with pyridoxalphosphate, TRANSFERASE
Deposited on 2012-01-26, released 2012-02-08
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-02-08, with a file datestamp of 2012-02-03.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: 0.149
AEROSPACI score: 0.64 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative pyridoxal phosphate-dependent transferase
    Species: Clostridium difficile [TaxId:272563]
    Gene: CD2733, CD630_27330
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4dgta_
  • Chain 'B':
    Compound: Putative pyridoxal phosphate-dependent transferase
    Species: Clostridium difficile [TaxId:272563]
    Gene: CD2733, CD630_27330
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d4dgtb_
  • Heterogens: PLP, MG, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4dgtA (A:)
snamnynfneivdrsnnfsskwsemekkygtndllpmwvadmdfkaapciidslknrleq
eiygyttrpdsynesivnwlyrrhnwkiksewliyspgvipaisllineltkandkimiq
epvyspfnsvvknnnreliisplqklengnyimdyedienkikdvklfilcnphnpvgrv
wtkdelkklgdiclkhnvkiisdeihsdiilkkhkhipmasiskefekntitcmaptktf
niaglqssyvvlpdekdykllddaftridikrnncfslvateasynngeswlesfleyle
snidfaikyinenmpklkvrkpegtyllwvdfsalglsdeelesilvqkgkvalnqgnsf
giggsgyqrinlacprsmleealiriknain

    Sequence, based on observed residues (ATOM records): (download) 
    >4dgtA (A:)
nynfneivdrsnnfsskwsemekkygtndllpmwvadmdfkaapciidslknrleqeiyg
yttrpdsynesivnwlyrrhnwkiksewliyspgvipaisllineltkandkimiqepvy
spfnsvvknnnreliisplqklengnyimdyedienkikdvklfilcnphnpvgrvwtkd
elkklgdiclkhnvkiisdeihsdiilkkhkhipmasiskefekntitcmaptktfniag
lqssyvvlpdekdykllddaftridikrnncfslvateasynngeswlesfleylesnid
faikyinenmpklkvrkpegtyllwvdfsalglsdeelesilvqkgkvalnqgnsfgigg
sgyqrinlacprsmleealiriknain

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4dgtB (B:)
snamnynfneivdrsnnfsskwsemekkygtndllpmwvadmdfkaapciidslknrleq
eiygyttrpdsynesivnwlyrrhnwkiksewliyspgvipaisllineltkandkimiq
epvyspfnsvvknnnreliisplqklengnyimdyedienkikdvklfilcnphnpvgrv
wtkdelkklgdiclkhnvkiisdeihsdiilkkhkhipmasiskefekntitcmaptktf
niaglqssyvvlpdekdykllddaftridikrnncfslvateasynngeswlesfleyle
snidfaikyinenmpklkvrkpegtyllwvdfsalglsdeelesilvqkgkvalnqgnsf
giggsgyqrinlacprsmleealiriknain

    Sequence, based on observed residues (ATOM records): (download) 
    >4dgtB (B:)
nynfneivdrsnnfsskwsemekkygtndllpmwvadmdfkaapciidslknrleqeiyg
yttrpdsynesivnwlyrrhnwkiksewliyspgvipaisllineltkandkimiqepvy
spfnsvvknnnreliisplqklengnyimdyedienkikdvklfilcnphnpvgrvwtkd
elkklgdiclkhnvkiisdeihsdiilkkhkhipmasiskefekntitcmaptktfniag
lqssyvvlpdekdykllddaftridikrnncfslvateasynngeswlesfleylesnid
faikyinenmpklkvrkpegtyllwvdfsalglsdeelesilvqkgkvalnqgnsfgigg
sgyqrinlacprsmleealiriknain