PDB entry 4ddn

View 4ddn on RCSB PDB site
Description: Structure analysis of a wound-inducible lectin ipomoelin from sweet potato
Class: sugar binding protein
Keywords: beta prism, Carbohydrate binding protein, Carbohydrate/Sugar Binding, SUGAR BINDING PROTEIN
Deposited on 2012-01-19, released 2012-08-01
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-08-01, with a file datestamp of 2012-07-27.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.186
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ipomoelin
    Species: Ipomoea batatas [TaxId:4120]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ddna_
  • Chain 'B':
    Compound: Ipomoelin
    Species: Ipomoea batatas [TaxId:4120]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ddnb_
  • Chain 'C':
    Compound: Ipomoelin
    Species: Ipomoea batatas [TaxId:4120]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ddnc_
  • Chain 'D':
    Compound: Ipomoelin
    Species: Ipomoea batatas [TaxId:4120]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4ddnd_
  • Heterogens: AMG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ddnA (A:)
hhhhhhmalqlaahsdarsgpvgsnggqfwsfrpvrplnkivlsfsgspdqtlnlisitf
ssnptdiitvggvgpepltytetvnidgdiieisgmianykgynvirsikfttnkkeygp
yganagtpfnikipdgnkivgffgnsgwyvdaigayytak

    Sequence, based on observed residues (ATOM records): (download) 
    >4ddnA (A:)
malqlaahsdarsgpvgsnggqfwsfrpvrplnkivlsfsgspdqtlnlisitfssnptd
iitvggvgpepltytetvnidgdiieisgmianykgynvirsikfttnkkeygpyganag
tpfnikipdgnkivgffgnsgwyvdaigayytak

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ddnB (B:)
hhhhhhmalqlaahsdarsgpvgsnggqfwsfrpvrplnkivlsfsgspdqtlnlisitf
ssnptdiitvggvgpepltytetvnidgdiieisgmianykgynvirsikfttnkkeygp
yganagtpfnikipdgnkivgffgnsgwyvdaigayytak

    Sequence, based on observed residues (ATOM records): (download) 
    >4ddnB (B:)
malqlaahsdarsgpvgsnggqfwsfrpvrplnkivlsfsgspdqtlnlisitfssnptd
iitvggvgpepltytetvnidgdiieisgmianykgynvirsikfttnkkeygpyganag
tpfnikipdgnkivgffgnsgwyvdaigayytak

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ddnC (C:)
hhhhhhmalqlaahsdarsgpvgsnggqfwsfrpvrplnkivlsfsgspdqtlnlisitf
ssnptdiitvggvgpepltytetvnidgdiieisgmianykgynvirsikfttnkkeygp
yganagtpfnikipdgnkivgffgnsgwyvdaigayytak

    Sequence, based on observed residues (ATOM records): (download) 
    >4ddnC (C:)
malqlaahsdarsgpvgsnggqfwsfrpvrplnkivlsfsgspdqtlnlisitfssnptd
iitvggvgpepltytetvnidgdiieisgmianykgynvirsikfttnkkeygpyganag
tpfnikipdgnkivgffgnsgwyvdaigayytak

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ddnD (D:)
hhhhhhmalqlaahsdarsgpvgsnggqfwsfrpvrplnkivlsfsgspdqtlnlisitf
ssnptdiitvggvgpepltytetvnidgdiieisgmianykgynvirsikfttnkkeygp
yganagtpfnikipdgnkivgffgnsgwyvdaigayytak

    Sequence, based on observed residues (ATOM records): (download) 
    >4ddnD (D:)
malqlaahsdarsgpvgsnggqfwsfrpvrplnkivlsfsgspdqtlnlisitfssnptd
iitvggvgpepltytetvnidgdiieisgmianykgynvirsikfttnkkeygpyganag
tpfnikipdgnkivgffgnsgwyvdaigayytak