PDB entry 4d99

View 4d99 on RCSB PDB site
Description: Salmonella typhimurium D-Cysteine desulfhydrase with L-ser bound non-covalently at the active site
Class: Lyase
Keywords: Fold type II PLP-dependent enzyme, Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily, Lyase
Deposited on 2012-01-11, released 2012-05-30
The last revision prior to the SCOPe 2.05 freeze date was dated 2012-05-30, with a file datestamp of 2012-05-25.
Experiment type: XRAY
Resolution: 2.01 Å
R-factor: 0.214
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-Cysteine desulfhydrase
    Species: Salmonella typhimurium [TaxId:90371]
    Gene: dcyD, STM1953
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4d99a_
  • Chain 'B':
    Compound: D-Cysteine desulfhydrase
    Species: Salmonella typhimurium [TaxId:90371]
    Gene: dcyD, STM1953
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4d99b_
  • Chain 'C':
    Compound: D-Cysteine desulfhydrase
    Species: Salmonella typhimurium [TaxId:90371]
    Gene: dcyD, STM1953
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4d99c_
  • Chain 'D':
    Compound: D-Cysteine desulfhydrase
    Species: Salmonella typhimurium [TaxId:90371]
    Gene: dcyD, STM1953
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4d99d_
  • Heterogens: BEN, SER, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4d99A (A:)
mrgshhhhhhgmasmplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpia
mggnklrkleflvadalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigtt
aenyltngnrllldlfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalga
mgyvesaleiaqqceevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvae
qkpkvialqqaiagqlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpv
ytgkamaglidgisqkrfnddgpilfihtggapalfayhphv

    Sequence, based on observed residues (ATOM records): (download) 
    >4d99A (A:)
mplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpiamggnklrkleflva
dalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigttaenyltngnrllld
lfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalgamgyvesaleiaqqc
eevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvaeqkpkvialqqaiag
qlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpvytgkamaglidgis
qkrfnddgpilfihtggapalfayhphv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4d99B (B:)
mrgshhhhhhgmasmplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpia
mggnklrkleflvadalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigtt
aenyltngnrllldlfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalga
mgyvesaleiaqqceevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvae
qkpkvialqqaiagqlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpv
ytgkamaglidgisqkrfnddgpilfihtggapalfayhphv

    Sequence, based on observed residues (ATOM records): (download) 
    >4d99B (B:)
hhltrfprlefigaptpleylprlsdylgreiyikrddvtpiamggnklrkleflvadal
regadtlitagaiqsnhvrqtaavaaklglhcvallenpigttaenyltngnrllldlfn
tqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalgamgyvesaleiaqqceev
glssvvvasgsagthaglavglehlmpdveligvtvsrsvaeqkpkvialqqaiagqlal
tatadihlwddyfapgygvpndagmeavkllaslegvlldpvytgkamaglidgisqkrf
nddgpilfihtggapalfayhphv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4d99C (C:)
mrgshhhhhhgmasmplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpia
mggnklrkleflvadalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigtt
aenyltngnrllldlfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalga
mgyvesaleiaqqceevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvae
qkpkvialqqaiagqlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpv
ytgkamaglidgisqkrfnddgpilfihtggapalfayhphv

    Sequence, based on observed residues (ATOM records): (download) 
    >4d99C (C:)
ltrfprlefigaptpleylprlsdylgreiyikrddvtpiamggnklrkleflvadalre
gadtlitagaiqsnhvrqtaavaaklglhcvallenpigttaenyltngnrllldlfntq
iemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalgamgyvesaleiaqqceevvg
lssvvvasgsagthaglavglehlmpdveligvtvsrsvaeqkpkvialqqaiagqlalt
atadihlwddyfapgygvpndagmeavkllaslegvlldpvytgkamaglidgisqkrfn
ddgpilfihtggapalfayhphv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4d99D (D:)
mrgshhhhhhgmasmplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpia
mggnklrkleflvadalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigtt
aenyltngnrllldlfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalga
mgyvesaleiaqqceevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvae
qkpkvialqqaiagqlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpv
ytgkamaglidgisqkrfnddgpilfihtggapalfayhphv

    Sequence, based on observed residues (ATOM records): (download) 
    >4d99D (D:)
mplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpiamggnklrkleflva
dalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigttaenyltngnrllld
lfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalgamgyvesaleiaqqc
eevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvaeqkpkvialqqaiag
qlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpvytgkamaglidgis
qkrfnddgpilfihtggapalfayhphv