PDB entry 4d98

View 4d98 on RCSB PDB site
Description: Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis in space group H32 at pH 7.5
Class: transferase
Keywords: Phosphorylase/hydrolase-like, TRANSFERASE
Deposited on 2012-01-11, released 2012-09-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-09-26, with a file datestamp of 2012-09-21.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.17
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Bacillus subtilis [TaxId:1423]
    Gene: BSU19630, deoD, punB
    Database cross-references and differences (RAF-indexed):
    • Uniprot O34925
      • see remark 999 (244)
    Domains in SCOPe 2.08: d4d98a_
  • Chain 'B':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Bacillus subtilis [TaxId:1423]
    Gene: BSU19630, deoD, punB
    Database cross-references and differences (RAF-indexed):
    • Uniprot O34925
      • see remark 999 (244)
    Domains in SCOPe 2.08: d4d98b_
  • Heterogens: SO4, CL, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4d98A (A:)
mgsshhhhhhssglvprgshmsvhigaekgqiadtvllpgdplrakfiaetylenvecyn
evrgmygftgtykgkkisvqgtgmgvpsisiyvneliqsydvqnlirvgscgairkdvkv
rdvilamtsstdsqmnrvafgsvdfapcadfellknaydaakdkgvpvtvgsvftadqfy
nddsqieklakygvlgvemettalytlaakhgrkalsiltvsdhvltgeettaeerqttf
hdmidvalhsvsq

    Sequence, based on observed residues (ATOM records): (download) 
    >4d98A (A:)
svhigaekgqiadtvllpgdplrakfiaetylenvecynevrgmygftgtykgkkisvqg
tgmgvpsisiyvneliqsydvqnlirvgscgairkdvkvrdvilamtsstdsqmnrvafg
svdfapcadfellknaydaakdkgvpvtvgsvftadqfynddsqieklakygvlgvemet
talytlaakhgrkalsiltvsdhvltgeettaeerqttfhdmidvalhsvs

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4d98B (B:)
mgsshhhhhhssglvprgshmsvhigaekgqiadtvllpgdplrakfiaetylenvecyn
evrgmygftgtykgkkisvqgtgmgvpsisiyvneliqsydvqnlirvgscgairkdvkv
rdvilamtsstdsqmnrvafgsvdfapcadfellknaydaakdkgvpvtvgsvftadqfy
nddsqieklakygvlgvemettalytlaakhgrkalsiltvsdhvltgeettaeerqttf
hdmidvalhsvsq

    Sequence, based on observed residues (ATOM records): (download) 
    >4d98B (B:)
svhigaekgqiadtvllpgdplrakfiaetylenvecynevrgmygftgtykgkkisvqg
tgmgvpsisiyvneliqsydvqnlirvgscgairkdvkvrdvilamtsstdsqmnrvafg
svdfapcadfellknaydaakdkgvpvtvgsvftadqfynddsqieklakygvlgvemet
talytlaakhgrkalsiltvsdhvltgeettaeerqttfhdmidvalhsvs