PDB entry 4d92

View 4d92 on RCSB PDB site
Description: Salmonella typhimurium D-Cysteine desulfhydrase soaked with beta-chloro-D-alanine shows pyruvate bound 4 A away from active site
Class: lyase
Keywords: Fold type II PLP-dependent enzyme, Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily, Lyase
Deposited on 2012-01-11, released 2012-05-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-05-17, with a file datestamp of 2017-05-12.
Experiment type: XRAY
Resolution: 2.22 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-Cysteine desulfhydrase
    Species: Salmonella typhimurium [TaxId:90371]
    Gene: dcyD, STM1953
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4d92a_
  • Chain 'B':
    Compound: D-Cysteine desulfhydrase
    Species: Salmonella typhimurium [TaxId:90371]
    Gene: dcyD, STM1953
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4d92b_
  • Chain 'C':
    Compound: D-Cysteine desulfhydrase
    Species: Salmonella typhimurium [TaxId:90371]
    Gene: dcyD, STM1953
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4d92c_
  • Chain 'D':
    Compound: D-Cysteine desulfhydrase
    Species: Salmonella typhimurium [TaxId:90371]
    Gene: dcyD, STM1953
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4d92d_
  • Heterogens: BEN, PYR, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4d92A (A:)
mrgshhhhhhgmasmplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpia
mggnklrkleflvadalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigtt
aenyltngnrllldlfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalga
mgyvesaleiaqqceevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvae
qkpkvialqqaiagqlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpv
ytgkamaglidgisqkrfnddgpilfihtggapalfayhphv

    Sequence, based on observed residues (ATOM records): (download) 
    >4d92A (A:)
mplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpiamggnklrkleflva
dalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigttaenyltngnrllld
lfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalgamgyvesaleiaqqc
eevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvaeqkpkvialqqaiag
qlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpvytgkamaglidgis
qkrfnddgpilfihtggapalfayhphv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4d92B (B:)
mrgshhhhhhgmasmplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpia
mggnklrkleflvadalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigtt
aenyltngnrllldlfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalga
mgyvesaleiaqqceevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvae
qkpkvialqqaiagqlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpv
ytgkamaglidgisqkrfnddgpilfihtggapalfayhphv

    Sequence, based on observed residues (ATOM records): (download) 
    >4d92B (B:)
hhltrfprlefigaptpleylprlsdylgreiyikrddvtpiamggnklrkleflvadal
regadtlitagaiqsnhvrqtaavaaklglhcvallenpigttaenyltngnrllldlfn
tqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalgamgyvesaleiaqqcels
svvvasgsagthaglavglehlmpdveligvtvsrsvaeqkpkvialqqaiagqlaltat
adihlwddyfapgygvpndagmeavkllaslegvlldpvytgkamaglidgisqkrfndd
gpilfihtggapalfayhphv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4d92C (C:)
mrgshhhhhhgmasmplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpia
mggnklrkleflvadalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigtt
aenyltngnrllldlfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalga
mgyvesaleiaqqceevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvae
qkpkvialqqaiagqlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpv
ytgkamaglidgisqkrfnddgpilfihtggapalfayhphv

    Sequence, based on observed residues (ATOM records): (download) 
    >4d92C (C:)
trfprlefigaptpleylprlsdylgreiyikrddvtpiamggnklrkleflvadalreg
adtlitagaiqsnhvrqtaavaaklglhcvallenpigttaenyltngnrllldlfntqi
emcdaltdpdaqlqtlatrfrpyvipvggssalgamgyvesaleiaqqceevvglssvvv
asgsagthaglavglehlmpdveligvtvsrsvaeqkpkvialqqaiagqlaltatadih
lwddyfapgygvpndagmeavkllaslegvlldpvytgkamaglidgisqkrfnddgpil
fihtggapalfayhphv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4d92D (D:)
mrgshhhhhhgmasmplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpia
mggnklrkleflvadalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigtt
aenyltngnrllldlfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalga
mgyvesaleiaqqceevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvae
qkpkvialqqaiagqlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpv
ytgkamaglidgisqkrfnddgpilfihtggapalfayhphv

    Sequence, based on observed residues (ATOM records): (download) 
    >4d92D (D:)
mplhhltrfprlefigaptpleylprlsdylgreiyikrddvtpiamggnklrkleflva
dalregadtlitagaiqsnhvrqtaavaaklglhcvallenpigttaenyltngnrllld
lfntqiemcdaltdpdaqlqtlatrieaqgfrpyvipvggssalgamgyvesaleiaqqc
eevvglssvvvasgsagthaglavglehlmpdveligvtvsrsvaeqkpkvialqqaiag
qlaltatadihlwddyfapgygvpndagmeavkllaslegvlldpvytgkamaglidgis
qkrfnddgpilfihtggapalfayhphv