PDB entry 4d8v

View 4d8v on RCSB PDB site
Description: Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis at pH 4.2
Class: transferase
Keywords: Phosphorylase/hydrolase-like, TRANSFERASE
Deposited on 2012-01-11, released 2012-09-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-09-26, with a file datestamp of 2012-09-21.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.228
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Bacillus subtilis [TaxId:1423]
    Gene: BSU19630, deoD, punB
    Database cross-references and differences (RAF-indexed):
    • Uniprot O34925
      • see remark 999 (244)
    Domains in SCOPe 2.08: d4d8va_
  • Chain 'B':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Bacillus subtilis [TaxId:1423]
    Gene: BSU19630, deoD, punB
    Database cross-references and differences (RAF-indexed):
    • Uniprot O34925
      • see remark 999 (244)
    Domains in SCOPe 2.08: d4d8vb_
  • Heterogens: SO4, ADE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4d8vA (A:)
    mgsshhhhhhssglvprgshmsvhigaekgqiadtvllpgdplrakfiaetylenvecyn
    evrgmygftgtykgkkisvqgtgmgvpsisiyvneliqsydvqnlirvgscgairkdvkv
    rdvilamtsstdsqmnrvafgsvdfapcadfellknaydaakdkgvpvtvgsvftadqfy
    nddsqieklakygvlgvemettalytlaakhgrkalsiltvsdhvltgeettaeerqttf
    hdmidvalhsvsq
    

    Sequence, based on observed residues (ATOM records): (download)
    >4d8vA (A:)
    svhigaekgqiadtvllpgdplrakfiaetylenvecynevrgmygftgtykgkkisvqg
    tgmgvpsisiyvneliqsydvqnlirvgscgairkdvkvrdvilamtsstdsqmnrvafg
    svdfapcadfellknaydaakdkgvpvtvgsvftadqfynddsqieklakygvlgvemet
    talytlaakhgrkalsiltvsdhvltgeettaeerqttfhdmidvalhsvs
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4d8vB (B:)
    mgsshhhhhhssglvprgshmsvhigaekgqiadtvllpgdplrakfiaetylenvecyn
    evrgmygftgtykgkkisvqgtgmgvpsisiyvneliqsydvqnlirvgscgairkdvkv
    rdvilamtsstdsqmnrvafgsvdfapcadfellknaydaakdkgvpvtvgsvftadqfy
    nddsqieklakygvlgvemettalytlaakhgrkalsiltvsdhvltgeettaeerqttf
    hdmidvalhsvsq
    

    Sequence, based on observed residues (ATOM records): (download)
    >4d8vB (B:)
    svhigaekgqiadtvllpgdplrakfiaetylenvecynevrgmygftgtykgkkisvqg
    tgmgvpsisiyvneliqsydvqnlirvgscgairkdvkvrdvilamtsstdsqmnrvafg
    svdfapcadfellknaydaakdkgvpvtvgsvftadqfynddsqieklakygvlgvemet
    talytlaakhgrkalsiltvsdhvltgeettaeerqttfhdmidvalhsvs