PDB entry 4d8v
View 4d8v on RCSB PDB site
Description: Crystal structure of the hexameric purine nucleoside phosphorylase from Bacillus subtilis at pH 4.2
Class: transferase
Keywords: Phosphorylase/hydrolase-like, TRANSFERASE
Deposited on
2012-01-11, released
2012-09-26
The last revision prior to the SCOPe 2.08 freeze date was dated
2012-09-26, with a file datestamp of
2012-09-21.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: 0.228
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Purine nucleoside phosphorylase deoD-type
Species: Bacillus subtilis [TaxId:1423]
Gene: BSU19630, deoD, punB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4d8va_ - Chain 'B':
Compound: Purine nucleoside phosphorylase deoD-type
Species: Bacillus subtilis [TaxId:1423]
Gene: BSU19630, deoD, punB
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d4d8vb_ - Heterogens: SO4, ADE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4d8vA (A:)
mgsshhhhhhssglvprgshmsvhigaekgqiadtvllpgdplrakfiaetylenvecyn
evrgmygftgtykgkkisvqgtgmgvpsisiyvneliqsydvqnlirvgscgairkdvkv
rdvilamtsstdsqmnrvafgsvdfapcadfellknaydaakdkgvpvtvgsvftadqfy
nddsqieklakygvlgvemettalytlaakhgrkalsiltvsdhvltgeettaeerqttf
hdmidvalhsvsq
Sequence, based on observed residues (ATOM records): (download)
>4d8vA (A:)
svhigaekgqiadtvllpgdplrakfiaetylenvecynevrgmygftgtykgkkisvqg
tgmgvpsisiyvneliqsydvqnlirvgscgairkdvkvrdvilamtsstdsqmnrvafg
svdfapcadfellknaydaakdkgvpvtvgsvftadqfynddsqieklakygvlgvemet
talytlaakhgrkalsiltvsdhvltgeettaeerqttfhdmidvalhsvs
- Chain 'B':
Sequence, based on SEQRES records: (download)
>4d8vB (B:)
mgsshhhhhhssglvprgshmsvhigaekgqiadtvllpgdplrakfiaetylenvecyn
evrgmygftgtykgkkisvqgtgmgvpsisiyvneliqsydvqnlirvgscgairkdvkv
rdvilamtsstdsqmnrvafgsvdfapcadfellknaydaakdkgvpvtvgsvftadqfy
nddsqieklakygvlgvemettalytlaakhgrkalsiltvsdhvltgeettaeerqttf
hdmidvalhsvsq
Sequence, based on observed residues (ATOM records): (download)
>4d8vB (B:)
svhigaekgqiadtvllpgdplrakfiaetylenvecynevrgmygftgtykgkkisvqg
tgmgvpsisiyvneliqsydvqnlirvgscgairkdvkvrdvilamtsstdsqmnrvafg
svdfapcadfellknaydaakdkgvpvtvgsvftadqfynddsqieklakygvlgvemet
talytlaakhgrkalsiltvsdhvltgeettaeerqttfhdmidvalhsvs