PDB entry 4d3c

View 4d3c on RCSB PDB site
Description: Crystal structure of the NK1 domain of HGF in complex with anti-HGF monoclonal antibody SFN68.
Class: protein binding
Keywords: protein binding
Deposited on 2014-10-21, released 2016-01-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2016-01-13, with a file datestamp of 2016-01-08.
Experiment type: XRAY
Resolution: 2.62 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hepatocyte growth factor
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P14210
      • engineered mutation (116)
    Domains in SCOPe 2.07: d4d3ca1
  • Chain 'H':
    Compound: sfn68 fab
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 4D3C (0-End)
  • Chain 'L':
    Compound: sfn68 fab
    Species: Oryctolagus cuniculus [TaxId:9986]
    Database cross-references and differences (RAF-indexed):
    • PDB 4D3C (0-End)
    Domains in SCOPe 2.07: d4d3cl1, d4d3cl2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4d3cA (A:)
    mgsshhhhhhsqdpqrkrrntihefkksakttlikidpalkiktkkvntadqcanrctrn
    kglpftckafvfdkarkqclwfpfnsmssgvkkefghefdlyenkdyirnciigkggsyk
    gtvsitksgikcqpwssmiphehsflpssyrgkdlqenycrnprgeeggpwcftsnpevr
    yevcdipqcseve
    

    Sequence, based on observed residues (ATOM records): (download)
    >4d3cA (A:)
    ntihefkksaktadqcanrctrnkglpftckafvfclwfpfnsmsdlyenkdyirnciig
    kggsykgtvsitksgikcqpwssmiphehsflpssyrgkdlqenycrnprgeeggpwcft
    snpevryevcdipqcse
    

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >4d3cL (L:)
    eldltqtpssvsaavggtvtincqasqsvsnllawyqqkpgqppklliygasnlesgvps
    rfrgsgsgteftltisgmkaedaatyycqsgyysagatfgagtnveikrtvaapsvfifp
    psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
    tlskadyekhkvyacevthqglsspvtksfnrgec
    

    Sequence, based on observed residues (ATOM records): (download)
    >4d3cL (L:)
    eldltqtpssvsaavggtvtincqasqsvsnllawyqqkpgqppklliygasnlesgvps
    rfrgsgsgteftltisgmkaedaatyycqsgyysagatfgagtnveikrtvaapsvfifp
    psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
    tlskadyekhkvyacevthqglsspvtks