PDB entry 4cqy

View 4cqy on RCSB PDB site
Description: H5 (tyTy) Del133/Ile155Thr Mutant Haemagglutinin in Complex with Avian Receptor Analogue LSTa
Class: viral protein
Keywords: viral protein, sialic acid, glycoprotein, virus receptor, avian flu, sialyllactosamine, 3sln, 3'sln, 6sln, 6'sln, lsta
Deposited on 2014-02-21, released 2014-05-28
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-06-11, with a file datestamp of 2014-06-06.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.19442
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: haemagglutinin ha1
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q207Z6 (2-End)
      • expression tag (0-1)
      • engineered mutation (151)
      • conflict (323)
    Domains in SCOPe 2.06: d4cqya1, d4cqya2
  • Chain 'B':
    Compound: haemagglutinin ha2
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4cqyb_
  • Chain 'C':
    Compound: haemagglutinin ha1
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q207Z6 (2-End)
      • expression tag (0-1)
      • engineered mutation (151)
    Domains in SCOPe 2.06: d4cqyc1, d4cqyc2
  • Chain 'D':
    Compound: haemagglutinin ha2
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4cqyd_
  • Chain 'E':
    Compound: haemagglutinin ha1
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q207Z6 (2-End)
      • expression tag (0-1)
      • engineered mutation (151)
    Domains in SCOPe 2.06: d4cqye1, d4cqye2
  • Chain 'F':
    Compound: haemagglutinin ha2
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4cqyf_
  • Heterogens: NAG, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4cqyA (A:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqyA (A:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4cqyB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqyB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqys

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4cqyC (C:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqyC (C:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnsp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4cqyD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqyD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqys

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4cqyE (E:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqyE (E:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnsp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4cqyF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqyF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyse