PDB entry 4cqx

View 4cqx on RCSB PDB site
Description: H5 (tyTy) Del133/Ile155Thr Mutant Haemagglutinin in Complex with Human Receptor Analogue 6'SLN
Class: viral protein
Keywords: viral protein, sialic acid, glycoprotein, virus receptor, avian flu, sialyllactosamine, 3sln, 3'sln, 6sln, 6'sln, lsta
Deposited on 2014-02-21, released 2014-05-28
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-06-11, with a file datestamp of 2014-06-06.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.1877
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: haemagglutinin ha1
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q207Z6 (2-End)
      • expression tag (0-1)
      • engineered mutation (151)
    Domains in SCOPe 2.05: d4cqxa_
  • Chain 'B':
    Compound: haemagglutinin ha2
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4cqxb_
  • Chain 'C':
    Compound: haemagglutinin ha1
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q207Z6 (2-End)
      • engineered mutation (151)
    Domains in SCOPe 2.05: d4cqxc_
  • Chain 'D':
    Compound: haemagglutinin ha2
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4cqxd_
  • Chain 'E':
    Compound: haemagglutinin ha1
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q207Z6 (2-End)
      • expression tag (0-1)
      • engineered mutation (151)
    Domains in SCOPe 2.05: d4cqxe_
  • Chain 'F':
    Compound: haemagglutinin ha2
    Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4cqxf_
  • Heterogens: NAG, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4cqxA (A:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqxA (A:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnsp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4cqxB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqxB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqys

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4cqxC (C:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqxC (C:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvagw
llgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiipks
swsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgihhp
ndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndainf
esngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihpltige
cpkyvkssrlvlatglrnsp

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4cqxD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqxD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqys

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4cqxE (E:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqxE (E:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnsp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4cqxF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqxF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqys