SCOPe 2.07: Structural Classification of Proteins — extended

PDB entry 4cqv

View 4cqv on RCSB PDB site
Description: Crystal structure of H5 (tyTy) Del133/Ile155Thr Mutant Haemagglutinin
Class: viral protein
Keywords: viral protein, sialic acid, glycoprotein, virus receptor, avian flu, sialyllactosamine, 3sln, 3'sln, 6sln, 6'sln, lsta
Deposited on 2014-02-21, released 2014-05-28
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-06-11, with a file datestamp of 2014-06-06.
Experiment type: XRAY
Resolution: 2.86 Å
R-factor: 0.19778
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: haemagglutinin ha1
Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
Database cross-references and differences (RAF-indexed):
- Uniprot Q207Z6 (2-End)
  - expression tag (0-1)
  - engineered mutation (151)
Domains in SCOPe 2.07: d4cqva1, d4cqva2
Chain 'B':
Compound: haemagglutinin ha2
Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
Database cross-references and differences (RAF-indexed):
- Uniprot Q207Z6 (0-End)
Domains in SCOPe 2.07: d4cqvb_
Chain 'C':
Compound: haemagglutinin ha1
Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
Database cross-references and differences (RAF-indexed):
- Uniprot Q207Z6 (2-End)
  - expression tag (0-1)
  - engineered mutation (151)
Domains in SCOPe 2.07: d4cqvc1, d4cqvc2
Chain 'D':
Compound: haemagglutinin ha2
Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
Database cross-references and differences (RAF-indexed):
- Uniprot Q207Z6 (0-End)
Domains in SCOPe 2.07: d4cqvd_
Chain 'E':
Compound: haemagglutinin ha1
Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
Database cross-references and differences (RAF-indexed):
- Uniprot Q207Z6 (2-End)
  - expression tag (0-1)
  - engineered mutation (151)
Domains in SCOPe 2.07: d4cqve1, d4cqve2
Chain 'F':
Compound: haemagglutinin ha2
Species: INFLUENZA A VIRUS (A/TURKEY/TURKEY/1/2005(H5N1)) [TaxId:375457]
Database cross-references and differences (RAF-indexed):
- Uniprot Q207Z6 (0-End)
Domains in SCOPe 2.07: d4cqvf_
Heterogens: NAG, PO4, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>4cqvA (A:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

Sequence, based on observed residues (ATOM records): (download)

>4cqvA (A:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnsp

Chain 'B':
Sequence, based on SEQRES records: (download)

>4cqvB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

Sequence, based on observed residues (ATOM records): (download)

>4cqvB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqys

Chain 'C':
Sequence, based on SEQRES records: (download)

>4cqvC (C:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

Sequence, based on observed residues (ATOM records): (download)

>4cqvC (C:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnsp

Chain 'D':
Sequence, based on SEQRES records: (download)

>4cqvD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

Sequence, based on observed residues (ATOM records): (download)

>4cqvD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqys

Chain 'E':
Sequence, based on SEQRES records: (download)

>4cqvE (E:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

Sequence, based on observed residues (ATOM records): (download)

>4cqvE (E:)
dpdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsva
gwllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiip
ksswsdheasgvssacpyqgrssffrnvvwltkkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnsp

Chain 'F':
Sequence, based on SEQRES records: (download)

>4cqvF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

Sequence, based on observed residues (ATOM records): (download)

>4cqvF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqys