PDB entry 4cqt

View 4cqt on RCSB PDB site
Description: H5 (VN1194) Asn186Lys Mutant Haemagglutinin in Complex with Avian Receptor Analogue 3'SLN
Class: viral protein
Keywords: viral protein, sialic acid, glycoprotein, virus receptor, avian flu, sialyllactosamine, 3sln, 3'sln, 6sln, 6'sln, lsta
Deposited on 2014-02-21, released 2014-05-28
Made obsolete by 5ajm on 2015-03-25

The last revision prior to the SCOPe 2.05 freeze date was dated 2014-06-11, with a file datestamp of 2014-06-06.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: 0.19888
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: haemagglutinin ha1
    Species: INFLUENZA A VIRUS (A/VIETNAM/1194/2004(H5N1)) [TaxId:644788]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6DQ34 (0-End)
      • conflict (191)
      • conflict (222)
    Domains in SCOPe 2.05: d4cqta_
  • Chain 'B':
    Compound: haemagglutinin ha2
    Species: INFLUENZA A VIRUS (A/VIETNAM/1194/2004(H5N1)) [TaxId:644788]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4cqtb_
  • Heterogens: NAG, MPO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4cqtA (A:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvagw
llgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipks
swssheaslgvssacpyqgkssffrnvvwlikknstyptikrsynntnqedllvlwgihh
pndaaeqtklyrnpttyisvgtstlnqrlvpriatrskvngqngrmeffwtilkpndain
fesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihpltig
ecpkyvksnrlvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqtA (A:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvagw
llgnpmcdefinvpewsyivekanpvndlcypgdfndyeelkhllsrinhfekiqiipks
swssheaslgvssacpyqgkssffrnvvwlikknstyptikrsynntnqedllvlwgihh
pndaaeqtklyrnpttyisvgtstlnqrlvpriatrskvngqngrmeffwtilkpndain
fesngnfiapeyaykivkkgdstimkseleygncntkcqtpmgainssmpfhnihpltig
ecpkyvksnrlvlatglrnsp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4cqtB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqyseea

    Sequence, based on observed residues (ATOM records): (download) 
    >4cqtB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhkcdnecmesvrngtydypqy