PDB entry 4c5k

View 4c5k on RCSB PDB site
Description: Structure of the pyridoxal kinase from Staphylococcus aureus in complex with ADP
Class: transferase
Keywords: transferase, ribokinase
Deposited on 2013-09-12, released 2014-03-19
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-04-16, with a file datestamp of 2014-04-11.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: 0.12983
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: phosphomethylpyrimidine kinase
    Species: Staphylococcus aureus subsp. aureus Mu50 [TaxId:158878]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99W31 (1-275)
      • expression tag (0)
    Domains in SCOPe 2.05: d4c5ka_
  • Chain 'B':
    Compound: phosphomethylpyrimidine kinase
    Species: Staphylococcus aureus subsp. aureus Mu50 [TaxId:158878]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99W31 (1-275)
      • expression tag (0)
    Domains in SCOPe 2.05: d4c5kb_
  • Chain 'C':
    Compound: phosphomethylpyrimidine kinase
    Species: Staphylococcus aureus subsp. aureus Mu50 [TaxId:158878]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99W31 (1-275)
      • expression tag (0)
    Domains in SCOPe 2.05: d4c5kc_
  • Chain 'D':
    Compound: phosphomethylpyrimidine kinase
    Species: Staphylococcus aureus subsp. aureus Mu50 [TaxId:158878]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99W31 (1-275)
      • expression tag (0)
    Domains in SCOPe 2.05: d4c5kd_
  • Heterogens: ADP, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4c5kA (A:)
galkkvltiagsdtsagagmqadlktfqeldtygmvaltaivtmdkdtwshdvtplpmdv
fekqletalsigpdaiktgmlgteeiikragevyeasnaqyfvvdpvmvckgedevlnpg
nteamikyllpkatvvtpnlfeagqlsglgklnsiedmkkaatiifdkgaqhviikggka
ldqdksydlyydgqtfyqlttdmfqqsynhgagctfaaattaylangkspkeavisakaf
vasaikngwkmndfvgpvdhgaynriehidvevtev

    Sequence, based on observed residues (ATOM records): (download) 
    >4c5kA (A:)
galkkvltiagsdtsagagmqadlktfqeldtygmvaltaivtmdkdtwshdvtplpmdv
fekqletalsigpdaiktgmlgteeiikragevyeasnaqyfvvdpvmvckdevlnpgnt
eamikyllpkatvvtpnlfeagqlsglgklnsiedmkkaatiifdkgaqhviikggkald
qdksydlyydgqtfyqlttdmfqqsynhgagctfaaattaylangkspkeavisakafva
saikngwkmndfvgpvdhgaynriehidvevtev

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4c5kB (B:)
galkkvltiagsdtsagagmqadlktfqeldtygmvaltaivtmdkdtwshdvtplpmdv
fekqletalsigpdaiktgmlgteeiikragevyeasnaqyfvvdpvmvckgedevlnpg
nteamikyllpkatvvtpnlfeagqlsglgklnsiedmkkaatiifdkgaqhviikggka
ldqdksydlyydgqtfyqlttdmfqqsynhgagctfaaattaylangkspkeavisakaf
vasaikngwkmndfvgpvdhgaynriehidvevtev

    Sequence, based on observed residues (ATOM records): (download) 
    >4c5kB (B:)
galkkvltiagsdtsagagmqadlktfqeldtygmvaltaivtmdkdtwshdvtplpmdv
fekqletalsigpdaiktgmlgteeiikragevyeasnaqyfvvdpvmvckdevlnpgnt
eamikyllpkatvvtpnlfeagqlsglgklnsiedmkkaatiifdkgaqhviikggkald
qdksydlyydgqtfyqlttdmfqqsynhgagctfaaattaylangkspkeavisakafva
saikngwkmndfvgpvdhgaynriehidvevtev

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4c5kC (C:)
galkkvltiagsdtsagagmqadlktfqeldtygmvaltaivtmdkdtwshdvtplpmdv
fekqletalsigpdaiktgmlgteeiikragevyeasnaqyfvvdpvmvckgedevlnpg
nteamikyllpkatvvtpnlfeagqlsglgklnsiedmkkaatiifdkgaqhviikggka
ldqdksydlyydgqtfyqlttdmfqqsynhgagctfaaattaylangkspkeavisakaf
vasaikngwkmndfvgpvdhgaynriehidvevtev

    Sequence, based on observed residues (ATOM records): (download) 
    >4c5kC (C:)
galkkvltiagsdtsagagmqadlktfqeldtygmvaltaivtmdkdtwshdvtplpmdv
fekqletalsigpdaiktgmlgteeiikragevyeasnaqyfvvdpvmevlnpgnteami
kyllpkatvvtpnlfeagqlsglgklnsiedmkkaatiifdkgaqhviikggkaldqdks
ydlyydgqtfyqlttdmfqqsynhgagctfaaattaylangkspkeavisakafvasaik
ngwkmndfvgpvdhgaynriehidvevtev

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4c5kD (D:)
galkkvltiagsdtsagagmqadlktfqeldtygmvaltaivtmdkdtwshdvtplpmdv
fekqletalsigpdaiktgmlgteeiikragevyeasnaqyfvvdpvmvckgedevlnpg
nteamikyllpkatvvtpnlfeagqlsglgklnsiedmkkaatiifdkgaqhviikggka
ldqdksydlyydgqtfyqlttdmfqqsynhgagctfaaattaylangkspkeavisakaf
vasaikngwkmndfvgpvdhgaynriehidvevtev