PDB entry 4c5b

View 4c5b on RCSB PDB site
Description: The X-ray crystal structure of D-alanyl-D-alanine ligase in complex with ATP and D-ala-D-ala
Class: ligase
Keywords: ligase, ddlb
Deposited on 2013-09-10, released 2015-01-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-01-21, with a file datestamp of 2015-01-16.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.17136
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: d-alanine--d-alanine ligase
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4c5ba1, d4c5ba2
  • Chain 'B':
    Compound: d-alanine--d-alanine ligase
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4c5bb1, d4c5bb2
  • Heterogens: ADP, DAL, CO3, MG, GOL, IMD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4c5bA (A:)
msyyhhhhhhdyipttenlyfngamtdkiavllggtsaerevslnsgaavlaglreggid
aypvdpkevdvtqlksmgfqkvfialhgrggedgtlqgmlelmglpytgsgvmasalsmd
klrskllwqgaglpvapwvaltraefekglsdkqlaeisalglpvivkpsregssvgmsk
vvaenalqdalrlafqhdeevliekwlsgpeftvailgeeilpsiriqpsgtfydyeaky
lsdetqyfcpagleasqeanlqalvlkawttlgckgwgridvmldsdgqfylleantspg
mtshslvpmaarqagmsfsqlvvrilelad

    Sequence, based on observed residues (ATOM records): (download) 
    >4c5bA (A:)
mtdkiavllggtsaerevslnsgaavlaglreggidaypvdpkevdvtqlksmgfqkvfi
alhgrggedgtlqgmlelmglpytgsgvmasalsmdklrskllwqgaglpvapwvaltra
efekglsdkqlaeisalglpvivkpsregssvgmskvvaenalqdalrlafqhdeevlie
kwlsgpeftvailgeeilpsiriqpsgtfydyeakylsdetqyfcpagleasqeanlqal
vlkawttlgckgwgridvmldsdgqfylleantspgmtshslvpmaarqagmsfsqlvvr
ilelad

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4c5bB (B:)
msyyhhhhhhdyipttenlyfngamtdkiavllggtsaerevslnsgaavlaglreggid
aypvdpkevdvtqlksmgfqkvfialhgrggedgtlqgmlelmglpytgsgvmasalsmd
klrskllwqgaglpvapwvaltraefekglsdkqlaeisalglpvivkpsregssvgmsk
vvaenalqdalrlafqhdeevliekwlsgpeftvailgeeilpsiriqpsgtfydyeaky
lsdetqyfcpagleasqeanlqalvlkawttlgckgwgridvmldsdgqfylleantspg
mtshslvpmaarqagmsfsqlvvrilelad

    Sequence, based on observed residues (ATOM records): (download) 
    >4c5bB (B:)
mtdkiavllggtsaerevslnsgaavlaglreggidaypvdpkevdvtqlksmgfqkvfi
alhgrggedgtlqgmlelmglpytgsgvmasalsmdklrskllwqgaglpvapwvaltra
efekglsdkqlaeisalglpvivkpsregssvgmskvvaenalqdalrlafqhdeevlie
kwlsgpeftvailgeeilpsiriqpsgtfydyeakylsdetqyfcpagleasqeanlqal
vlkawttlgckgwgridvmldsdgqfylleantspgmtshslvpmaarqagmsfsqlvvr
ilelad