PDB entry 4c5a

View 4c5a on RCSB PDB site
Description: The X-ray crystal structures of D-alanyl-D-alanine ligase in complex ADP and D-cycloserine phosphate
Class: ligase
Keywords: ligase, ddlb, antibiotic
Deposited on 2013-09-10, released 2015-01-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2015-01-21, with a file datestamp of 2015-01-16.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: 0.20634
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: d-alanine--d-alanine ligase
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4c5aa1, d4c5aa2
  • Chain 'B':
    Compound: d-alanine--d-alanine ligase
    Species: Escherichia coli [TaxId:83333]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d4c5ab1, d4c5ab2
  • Chain 'C':
    Compound: peptide
    Database cross-references and differences (RAF-indexed):
    • PDB 4C5A (0-7)
  • Heterogens: ADP, DS0, MG, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4c5aA (A:)
msyyhhhhhhdyipttenlyfngamtdkiavllggtsaerevslnsgaavlaglreggid
aypvdpkevdvtqlksmgfqkvfialhgrggedgtlqgmlelmglpytgsgvmasalsmd
klrskllwqgaglpvapwvaltraefekglsdkqlaeisalglpvivkpsregssvgmsk
vvaenalqdalrlafqhdeevliekwlsgpeftvailgeeilpsiriqpsgtfydyeaky
lsdetqyfcpagleasqeanlqalvlkawttlgckgwgridvmldsdgqfylleantspg
mtshslvpmaarqagmsfsqlvvrilelad

    Sequence, based on observed residues (ATOM records): (download) 
    >4c5aA (A:)
mtdkiavllggtsaerevslnsgaavlaglreggidaypvdpkevdvtqlksmgfqkvfi
alhgrggedgtlqgmlelmglpytgsgvmasalsmdklrskllwqgaglpvapwvaltra
efekglsdkqlaeisalglpvivkpsregssvgmskvvaenalqdalrlafqhdeevlie
kwlsgpeftvailgeeilpsiriqpsgtfydyeakylsdetqyfcpagleasqeanlqal
vlkawttlgckgwgridvmldsdgqfylleantspgmtshslvpmaarqagmsfsqlvvr
ilelad

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4c5aB (B:)
msyyhhhhhhdyipttenlyfngamtdkiavllggtsaerevslnsgaavlaglreggid
aypvdpkevdvtqlksmgfqkvfialhgrggedgtlqgmlelmglpytgsgvmasalsmd
klrskllwqgaglpvapwvaltraefekglsdkqlaeisalglpvivkpsregssvgmsk
vvaenalqdalrlafqhdeevliekwlsgpeftvailgeeilpsiriqpsgtfydyeaky
lsdetqyfcpagleasqeanlqalvlkawttlgckgwgridvmldsdgqfylleantspg
mtshslvpmaarqagmsfsqlvvrilelad

    Sequence, based on observed residues (ATOM records): (download) 
    >4c5aB (B:)
dkiavllggtsaerevslnsgaavlaglreggidaypvdpkevdvtqlksmgfqkvfial
hgrggedgtlqgmlelmglpytgsgvmasalsmdklrskllwqgaglpvapwvaltraef
ekglsdkqlaeisalglpvivkpsregssvgmskvvaenalqdalrlafqhdeevliekw
lsgpeftvailgeeilpsiriqpsgtfydyeakylsdetqyfcpagleasqeanlqalvl
kawttlgckgwgridvmldsdgqfylleantspgmtshslvpmaarqagmsfsqlvvril
elad

  • Chain 'C':
    No sequence available.