PDB entry 4bl5

View 4bl5 on RCSB PDB site
Description: Crystal structure of human GDP-L-fucose synthase with bound NADP and product GDP-L-fucose
Class: oxidoreductase
Keywords: oxidoreductase, isomerase
Deposited on 2013-05-01, released 2014-05-21
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-05-21, with a file datestamp of 2014-05-16.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.22482
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13630 (22-End)
      • expression tag (21)
    Domains in SCOPe 2.05: d4bl5a_
  • Chain 'B':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13630 (22-335)
      • expression tag (16-21)
    Domains in SCOPe 2.05: d4bl5b_
  • Chain 'C':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13630 (22-335)
      • expression tag (15-21)
    Domains in SCOPe 2.05: d4bl5c_
  • Chain 'D':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13630 (22-335)
      • expression tag (21)
    Domains in SCOPe 2.05: d4bl5d_
  • Chain 'E':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13630 (22-End)
      • expression tag (15-21)
    Domains in SCOPe 2.05: d4bl5e_
  • Chain 'F':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4bl5f_
  • Chain 'G':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13630 (22-End)
      • expression tag (15-21)
    Domains in SCOPe 2.05: d4bl5g_
  • Chain 'H':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13630 (22-335)
      • expression tag (21)
    Domains in SCOPe 2.05: d4bl5h_
  • Chain 'I':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13630 (22-335)
      • expression tag (15-21)
    Domains in SCOPe 2.05: d4bl5i_
  • Chain 'J':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4bl5j_
  • Chain 'K':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4bl5k_
  • Chain 'L':
    Compound: GDP-l-fucose synthase
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13630 (22-End)
      • expression tag (15-21)
    Domains in SCOPe 2.05: d4bl5l_
  • Heterogens: NAP, GFB, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4bl5A (A:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5A (A:)
    smrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfekvqpthv
    ihlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpdkttypi
    detmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnfniedgh
    vlpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepiilsvge
    edevsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftpfkqavk
    etcawftdnyeqar
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4bl5B (B:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5B (B:)
    nlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfekv
    qpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpdk
    ttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnfn
    iedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepii
    lsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftpf
    kqavketcawftdnyeqark
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4bl5C (C:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5C (C:)
    enlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfek
    vqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpd
    kttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnf
    niedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepi
    ilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftp
    fkqavketcawftdnyeqark
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4bl5D (D:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5D (D:)
    smrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfekvqpthv
    ihlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpdkttypi
    detmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnfniedgh
    vlpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepiilsvge
    edevsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftpfkqavk
    etcawftdnyeqark
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4bl5E (E:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5E (E:)
    enlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfek
    vqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpd
    kttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnf
    niedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepi
    ilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftp
    fkqavketcawftdnyeqar
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4bl5F (F:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5F (F:)
    mrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfekvqpthvi
    hlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpdkttypid
    etmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnfniedghv
    lpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepiilsvgee
    devsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftpfkqavke
    tcawftdnyeqar
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >4bl5G (G:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5G (G:)
    enlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfek
    vqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpd
    kttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnf
    niedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepi
    ilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftp
    fkqavketcawftdnyeqar
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >4bl5H (H:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5H (H:)
    smrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfekvqpthv
    ihlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpdkttypi
    detmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnfniedgh
    vlpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepiilsvge
    edevsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftpfkqavk
    etcawftdnyeqark
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >4bl5I (I:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5I (I:)
    enlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfek
    vqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpd
    kttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnf
    niedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepi
    ilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftp
    fkqavketcawftdnyeqark
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >4bl5J (J:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5J (J:)
    mrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfekvqpthvi
    hlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpdkttypid
    etmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnfniedghv
    lpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepiilsvgee
    devsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftpfkqavke
    tcawftdnyeqar
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >4bl5K (K:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5K (K:)
    mrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfekvqpthvi
    hlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpdkttypid
    etmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnfniedghv
    lpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepiilsvgee
    devsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftpfkqavke
    tcawftdnyeqar
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >4bl5L (L:)
    mhhhhhhssgvdlgtenlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskd
    adltdtaqtralfekvqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevg
    arkvvsclstcifpdkttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctf
    taviptnvfgphdnfniedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaq
    lfiwvlreynevepiilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktas
    nsklrtylpdfrftpfkqavketcawftdnyeqark
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bl5L (L:)
    enlyfqsmrilvtggsglvgkaiqkvvadgaglpgedwvfvsskdadltdtaqtralfek
    vqpthvihlaamvgglfrnikynldfwrknvhmndnvlhsafevgarkvvsclstcifpd
    kttypidetmihngpphnsnfgysyakrmidvqnrayfqqygctftaviptnvfgphdnf
    niedghvlpglihkvhlakssgsaltvwgtgnprrqfiysldlaqlfiwvlreynevepi
    ilsvgeedevsikeaaeavveamdfhgevtfdttksdgqfkktasnsklrtylpdfrftp
    fkqavketcawftdnyeqar