PDB entry 4bgz

View 4bgz on RCSB PDB site
Description: Crystal Structure of H5 (tyTy) Influenza Virus Haemagglutinin
Class: viral protein
Keywords: viral protein, n-glycosylation, virus receptor, bird flu
Deposited on 2013-03-29, released 2013-04-24
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-05-22, with a file datestamp of 2013-05-17.
Experiment type: XRAY
Resolution: 2.68 Å
R-factor: 0.21544
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: INFLUENZA VIRUS [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4bgza_
  • Chain 'B':
    Compound: haemagglutinin ha1
    Species: INFLUENZA VIRUS [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4bgzb_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: INFLUENZA VIRUS [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4bgzc_
  • Chain 'D':
    Compound: haemagglutinin ha1
    Species: INFLUENZA VIRUS [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4bgzd_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: INFLUENZA VIRUS [TaxId:375457]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q207Z6 (1-End)
      • expression tag (0)
    Domains in SCOPe 2.05: d4bgze_
  • Chain 'F':
    Compound: haemagglutinin ha1
    Species: INFLUENZA VIRUS [TaxId:375457]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d4bgzf_
  • Heterogens: NAG, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4bgzA (A:)
pdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheasagvssacpyqgrssffrnvvwlikkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4bgzA (A:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvagw
llgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiipks
swsdheasagvssacpyqgrssffrnvvwlikkdnayptikrsynntnqedllvlwgihh
pndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndain
fesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihpltig
ecpkyvkssrlvlatglrn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4bgzB (B:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

    Sequence, based on observed residues (ATOM records): (download) 
    >4bgzB (B:)
ieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmntqfeavgre
fnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlydkvrlqlrdn
akelgngcfefyhrcdnecmesvrn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4bgzC (C:)
pdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheasagvssacpyqgrssffrnvvwlikkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4bgzC (C:)
dqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvagw
llgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiipks
swsdheasagvssacpyqgrssffrnvvwlikkdnayptikrsynntnqedllvlwgihh
pndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndain
fesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihpltig
ecpkyvkssrlvlatglrn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4bgzD (D:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

    Sequence, based on observed residues (ATOM records): (download) 
    >4bgzD (D:)
ieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmntqfeavgre
fnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlydkvrlqlrdn
akelgngcfefyhrcdnecmesvrn

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4bgzE (E:)
pdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheasagvssacpyqgrssffrnvvwlikkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrnspqretr

    Sequence, based on observed residues (ATOM records): (download) 
    >4bgzE (E:)
pdqicigyhannsteqvdtimeknvtvthaqdilekthngklcdldgvkplilrdcsvag
wllgnpmcdeflnvpewsyivekinpandlcypgnfndyeelkhllsrinhfekiqiipk
sswsdheasagvssacpyqgrssffrnvvwlikkdnayptikrsynntnqedllvlwgih
hpndaaeqtrlyqnpttyisvgtstlnqrlvpkiatrskvngqsgrmeffwtilkpndai
nfesngnfiapenaykivkkgdstimkseleygncntkcqtpigainssmpfhnihplti
gecpkyvkssrlvlatglrn

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4bgzF (F:)
glfgaiagfieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmn
tqfeavgrefnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlyd
kvrlqlrdnakelgngcfefyhrcdnecmesvrngtydypqyseea

    Sequence, based on observed residues (ATOM records): (download) 
    >4bgzF (F:)
ieggwqgmvdgwygyhhsneqgsgyaadkestqkaidgvtnkvnsiidkmntqfeavgre
fnnlerrienlnkkmedgfldvwtynaellvlmenertldfhdsnvknlydkvrlqlrdn
akelgngcfefyhrcdnecmesvrngty