PDB entry 4bdu

View 4bdu on RCSB PDB site
Description: Bax BH3-in-Groove dimer (GFP)
Class: apoptosis
Keywords: apoptosis, programmed cell death, bcl-2 family, chimera
Deposited on 2012-10-08, released 2013-02-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-10-23, with a file datestamp of 2019-10-18.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: green fluorescent protein, apoptosis regulator bax
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212 (Start-232)
      • engineered mutation (67)
      • chromophore (67)
      • engineered mutation (208)
    • Uniprot Q07812
    Domains in SCOPe 2.08: d4bdua1, d4bdua2
  • Chain 'B':
    Compound: green fluorescent protein, apoptosis regulator bax
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212 (Start-232)
      • engineered mutation (67)
      • chromophore (67)
      • engineered mutation (208)
    • Uniprot Q07812
    Domains in SCOPe 2.08: d4bdub1, d4bdub2
  • Chain 'C':
    Compound: green fluorescent protein, apoptosis regulator bax
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212 (Start-232)
      • engineered mutation (67)
      • chromophore (67)
      • engineered mutation (208)
    • Uniprot Q07812
    Domains in SCOPe 2.08: d4bduc1, d4bduc2
  • Chain 'D':
    Compound: green fluorescent protein, apoptosis regulator bax
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42212 (Start-232)
      • engineered mutation (67)
      • chromophore (67)
      • engineered mutation (208)
    • Uniprot Q07812
    Domains in SCOPe 2.08: d4bdud1, d4bdud2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4bduA (A:)
gshmskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpw
ptlvttfgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegd
tlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvq
ladhyqqntpigdgpvllpdnhylstqsnlskdpnekrdhmvllefvtaagitgsdastk
klseslkrigdeldsnmelqrmiaavdtdsprevffrvaadmfsdgnfnwgrvvalfyfa
sklvlkalstk

    Sequence, based on observed residues (ATOM records): (download) 
    >4bduA (A:)
skgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlv
ttfgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvn
rielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqladh
yqqntpigdgpvllpdnhylstqsnlskdpnekrdhmvllefvtaagitastkklseslk
rigdeldsnmelqrmiaavdtdsprevffrvaadmfsdgnfnwgrvvalfyfasklvl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4bduB (B:)
gshmskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpw
ptlvttfgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegd
tlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvq
ladhyqqntpigdgpvllpdnhylstqsnlskdpnekrdhmvllefvtaagitgsdastk
klseslkrigdeldsnmelqrmiaavdtdsprevffrvaadmfsdgnfnwgrvvalfyfa
sklvlkalstk

    Sequence, based on observed residues (ATOM records): (download) 
    >4bduB (B:)
skgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlv
ttfgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvn
rielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqladh
yqqntpigdgpvllpdnhylstqsnlskdpnekrdhmvllefvtaagitastkklseslk
rigdeldsnmelqrmiaavdtdsprevffrvaadmfsdgnfnwgrvvalfyfasklvl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4bduC (C:)
gshmskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpw
ptlvttfgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegd
tlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvq
ladhyqqntpigdgpvllpdnhylstqsnlskdpnekrdhmvllefvtaagitgsdastk
klseslkrigdeldsnmelqrmiaavdtdsprevffrvaadmfsdgnfnwgrvvalfyfa
sklvlkalstk

    Sequence, based on observed residues (ATOM records): (download) 
    >4bduC (C:)
skgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlv
ttfgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvn
rielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqladh
yqqntpigdgpvllpdnhylstqsnlskdpnekrdhmvllefvtaagitastkklseslk
rigdeldsnmelqrmiaavdtdsprevffrvaadmfsdgnfnwgrvvalfyfasklvl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4bduD (D:)
gshmskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpw
ptlvttfgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegd
tlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvq
ladhyqqntpigdgpvllpdnhylstqsnlskdpnekrdhmvllefvtaagitgsdastk
klseslkrigdeldsnmelqrmiaavdtdsprevffrvaadmfsdgnfnwgrvvalfyfa
sklvlkalstk

    Sequence, based on observed residues (ATOM records): (download) 
    >4bduD (D:)
skgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptlv
ttfgygvqcfsrypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlvn
rielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqladh
yqqntpigdgpvllpdnhylstqsnlskdpnekrdhmvllefvtaagitastkklseslk
rigdeldsnmelqrmiaavdtdsprevffrvaadmfsdgnfnwgrvvalfyfasklvl