PDB entry 4bdq

View 4bdq on RCSB PDB site
Description: Crystal structure of the GluK2 R775A LBD dimer in complex with glutamate
Class: metal transport
Keywords: metal transport, ionotropic glutamate receptor, kainate receptor
Deposited on 2012-10-05, released 2013-04-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2015-04-29, with a file datestamp of 2015-04-24.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor, ionotropic kainate 2
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42260 (119-End)
      • linker (117-118)
      • engineered mutation (227)
    Domains in SCOPe 2.08: d4bdqa_
  • Chain 'B':
    Compound: Glutamate receptor, ionotropic kainate 2
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42260 (119-End)
      • linker (117-118)
      • engineered mutation (227)
    Domains in SCOPe 2.08: d4bdqb_
  • Heterogens: GLU, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4bdqA (A:)
    gsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgk
    ygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisilyrkgtp
    idsaddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegiqr
    vltsdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyadkitiailqlqe
    egklhmmkekwwrgngcpepr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bdqA (A:)
    slivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgkygaq
    ddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisilyrkgtpidsa
    ddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegiqrvlts
    dyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyadkitiailqlqeegkl
    hmmkekwwrc
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4bdqB (B:)
    gsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgk
    ygaqddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisilyrkgtp
    idsaddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegiqr
    vltsdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyadkitiailqlqe
    egklhmmkekwwrgngcpepr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bdqB (B:)
    slivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgkygaq
    ddvngqwngmvrelidhkadlavaplaityvrekvidfskpfmtlgisilyrkgtpidsa
    ddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegiqrvlts
    dyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyadkitiailqlqeegkl
    hmmkekwwc