PDB entry 4bdl

View 4bdl on RCSB PDB site
Description: Crystal structure of the GluK2 K531A LBD dimer in complex with glutamate
Class: metal transport
Keywords: metal transport, ionotropic glutamate receptor, kainate receptor
Deposited on 2012-10-05, released 2013-04-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-06-12, with a file datestamp of 2013-06-07.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.1709
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate receptor, ionotropic kainate 2
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42260 (119-End)
      • engineered mutation (103)
      • linker (117-118)
    Domains in SCOPe 2.08: d4bdla_
  • Chain 'B':
    Compound: Glutamate receptor, ionotropic kainate 2
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P42260 (119-End)
      • engineered mutation (103)
      • linker (117-118)
    Domains in SCOPe 2.08: d4bdlb_
  • Heterogens: GLU, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4bdlA (A:)
    gsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgk
    ygaqddvngqwngmvrelidhkadlavaplaityvrekvidfsapfmtlgisilyrkgtp
    idsaddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegiqr
    vltsdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailqlqe
    egklhmmkekwwrgngcpepr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bdlA (A:)
    rslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgkyga
    qddvngqwngmvrelidhkadlavaplaityvrekvidfsapfmtlgisilyrkgtpids
    addlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegiqrvlt
    sdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailqlqeegk
    lhmmkekww
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4bdlB (B:)
    gsnrslivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgk
    ygaqddvngqwngmvrelidhkadlavaplaityvrekvidfsapfmtlgisilyrkgtp
    idsaddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegiqr
    vltsdyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailqlqe
    egklhmmkekwwrgngcpepr
    

    Sequence, based on observed residues (ATOM records): (download)
    >4bdlB (B:)
    slivttileepyvlfkksdkplygndrfegycidllrelstilgftyeirlvedgkygaq
    ddvngqwngmvrelidhkadlavaplaityvrekvidfsapfmtlgisilyrkgtpidsa
    ddlakqtkieygavedgatmtffkkskistydkmwafmssrrqsvlvksneegiqrvlts
    dyaflmesttiefvtqrncnltqigglidskgygvgtpmgspyrdkitiailqlqeegkl
    hmmkekww