PDB entry 4ap4

View 4ap4 on RCSB PDB site
Description: Rnf4 - ubch5a - ubiquitin heterotrimeric complex
Class: ligase/signalling protein
Keywords: ligase-signalling protein complex, chimera
Deposited on 2012-03-30, released 2012-07-25
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-06-28, with a file datestamp of 2017-06-23.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: e3 ubiquitin ligase rnf4
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O88846 (69-132)
      • linker (68)
  • Chain 'B':
    Compound: ubiquitin-conjugating enzyme e2 d1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P51668 (6-152)
      • expression tag (2-5)
      • engineered mutation (27)
      • engineered mutation (90)
    Domains in SCOPe 2.07: d4ap4b1, d4ap4b2
  • Chain 'C':
    Compound: ubiquitin c
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ap4c_
  • Chain 'E':
    Compound: ubiquitin-conjugating enzyme e2 d1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P51668 (6-152)
      • engineered mutation (27)
      • engineered mutation (90)
    Domains in SCOPe 2.07: d4ap4e_
  • Chain 'F':
    Compound: ubiquitin c
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d4ap4f_
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ap4B (B:)
gagsgsmalkriqkelsdlqrdppahcragpvgddlfhwqatimgppdsayqggvffltv
hfptdypfkppkiafttkiyhpninsngsikldilrsqwspaltvskvllsicsllcdpn
pddplvpdiaqiyksdkekynrharewtqkyam

    Sequence, based on observed residues (ATOM records): (download) 
    >4ap4B (B:)
gsgsmalkriqkelsdlqrdppahcragpvgddlfhwqatimgppdsayqggvffltvhf
ptdypfkppkiafttkiyhpninsngsikldilrsqwspaltvskvllsicsllcdpnpd
dplvpdiaqiyksdkekynrharewtqkyam

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ap4C (C:)
gamgmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtl
sdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ap4C (C:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4ap4E (E:)
gagsgsmalkriqkelsdlqrdppahcragpvgddlfhwqatimgppdsayqggvffltv
hfptdypfkppkiafttkiyhpninsngsikldilrsqwspaltvskvllsicsllcdpn
pddplvpdiaqiyksdkekynrharewtqkyam

    Sequence, based on observed residues (ATOM records): (download) 
    >4ap4E (E:)
malkriqkelsdlqrdppahcragpvgddlfhwqatimgppdsayqggvffltvhfptdy
pfkppkiafttkiyhpninsngsikldilrsqwspaltvskvllsicsllcdpnpddplv
pdiaqiyksdkekynrharewtqkyam

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ap4F (F:)
gamgmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtl
sdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ap4F (F:)
gmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlrgg