PDB entry 4ap4

View 4ap4 on RCSB PDB site
Description: Rnf4 - ubch5a - ubiquitin heterotrimeric complex
Class: ligase/signalling protein
Keywords: ligase-signalling protein complex, chimera
Deposited on 2012-03-30, released 2012-07-25
The last revision prior to the SCOPe 2.03 freeze date was dated 2012-10-10, with a file datestamp of 2012-10-05.
Experiment type: XRAY
Resolution: 2.21 Å
R-factor: 0.20926
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: e3 ubiquitin ligase rnf4
    Species: Rattus norvegicus [TaxId:10116]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot O88846 (69-132)
      • linker (68)
  • Chain 'B':
    Compound: ubiquitin-conjugating enzyme e2 d1
    Species: Homo sapiens [TaxId:9606]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot P51668 (6-152)
      • expression tag (2-5)
      • engineered mutation (27)
      • engineered mutation (90)
    Domains in SCOPe 2.03: d4ap4b_
  • Chain 'C':
    Compound: ubiquitin c
    Species: Homo sapiens [TaxId:9606]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d4ap4c_
  • Chain 'E':
    Compound: ubiquitin-conjugating enzyme e2 d1
    Species: Homo sapiens [TaxId:9606]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • Uniprot P51668 (6-152)
      • engineered mutation (27)
      • engineered mutation (90)
    Domains in SCOPe 2.03: d4ap4e_
  • Chain 'F':
    Compound: ubiquitin c
    Species: Homo sapiens [TaxId:9606]
    Gene:
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d4ap4f_
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4ap4B (B:)
    gagsgsmalkriqkelsdlqrdppahcragpvgddlfhwqatimgppdsayqggvffltv
    hfptdypfkppkiafttkiyhpninsngsikldilrsqwspaltvskvllsicsllcdpn
    pddplvpdiaqiyksdkekynrharewtqkyam
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ap4B (B:)
    gsgsmalkriqkelsdlqrdppahcragpvgddlfhwqatimgppdsayqggvffltvhf
    ptdypfkppkiafttkiyhpninsngsikldilrsqwspaltvskvllsicsllcdpnpd
    dplvpdiaqiyksdkekynrharewtqkyam
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4ap4C (C:)
    gamgmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtl
    sdyniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ap4C (C:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >4ap4E (E:)
    gagsgsmalkriqkelsdlqrdppahcragpvgddlfhwqatimgppdsayqggvffltv
    hfptdypfkppkiafttkiyhpninsngsikldilrsqwspaltvskvllsicsllcdpn
    pddplvpdiaqiyksdkekynrharewtqkyam
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ap4E (E:)
    malkriqkelsdlqrdppahcragpvgddlfhwqatimgppdsayqggvffltvhfptdy
    pfkppkiafttkiyhpninsngsikldilrsqwspaltvskvllsicsllcdpnpddplv
    pdiaqiyksdkekynrharewtqkyam
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >4ap4F (F:)
    gamgmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtl
    sdyniqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >4ap4F (F:)
    gmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
    niqkestlhlvlrlrgg