PDB entry 4ao5

View 4ao5 on RCSB PDB site
Description: B. subtilis prophage dUTPase YosS in complex with dUMP
Class: hydrolase
Keywords: hydrolase, homotrimeric dutpases, phe-lid
Deposited on 2012-03-23, released 2013-04-03
The last revision prior to the SCOPe 2.03 freeze date was dated 2013-08-07, with a file datestamp of 2013-08-02.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.15347
AEROSPACI score: 0.62 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: spbc2 prophage-derived deoxyuridine 5'-triphosphate nucleo tidohydrolase yoss
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d4ao5a_
  • Chain 'B':
    Compound: spbc2 prophage-derived deoxyuridine 5'-triphosphate nucleo tidohydrolase yoss
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O34919 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d4ao5b_
  • Chain 'C':
    Compound: spbc2 prophage-derived deoxyuridine 5'-triphosphate nucleo tidohydrolase yoss
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d4ao5c_
  • Chain 'D':
    Compound: spbc2 prophage-derived deoxyuridine 5'-triphosphate nucleo tidohydrolase yoss
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O34919 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d4ao5d_
  • Chain 'E':
    Compound: spbc2 prophage-derived deoxyuridine 5'-triphosphate nucleo tidohydrolase yoss
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed):
    • Uniprot O34919 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.03: d4ao5e_
  • Chain 'F':
    Compound: spbc2 prophage-derived deoxyuridine 5'-triphosphate nucleo tidohydrolase yoss
    Species: Bacillus subtilis [TaxId:1423]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d4ao5f_
  • Heterogens: UMP, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ao5A (A:)
gpamqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeah
vvprsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkm
pavdlievdrlgngdrgghgstgtk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ao5A (A:)
mqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeahvvp
rsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkmpav
dlievdrl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ao5B (B:)
gpamqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeah
vvprsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkm
pavdlievdrlgngdrgghgstgtk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ao5B (B:)
amqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeahvv
prsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkmpa
vdlievdrl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ao5C (C:)
gpamqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeah
vvprsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkm
pavdlievdrlgngdrgghgstgtk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ao5C (C:)
mqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeahvvp
rsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkmpav
dlievdrl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ao5D (D:)
gpamqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeah
vvprsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkm
pavdlievdrlgngdrgghgstgtk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ao5D (D:)
amqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeahvv
prsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkmpa
vdlievdrl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >4ao5E (E:)
gpamqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeah
vvprsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkm
pavdlievdrlgngdrgghgstgtk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ao5E (E:)
amqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeahvv
prsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkmpa
vdlievdrl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >4ao5F (F:)
gpamqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeah
vvprsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkm
pavdlievdrlgngdrgghgstgtk

    Sequence, based on observed residues (ATOM records): (download) 
    >4ao5F (F:)
mqikikyldetqtrinkmeqgdwidlraaedvaikkdefklvplgvamelpegyeahvvp
rsstyknfgviqtnsmgvidesykgdndfwffpayalrdtkikkgdricqfrimkkmpav
dlievdrl