PDB entry 4amu

View 4amu on RCSB PDB site
Description: Structure of ornithine carbamoyltransferase from Mycoplasma penetrans with a P321 space group
Class: transferase
Keywords: transferase, ornithine transcarbamoylase, hydrolase
Deposited on 2012-03-13, released 2012-03-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-10-31, with a file datestamp of 2012-10-26.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.1724
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ornithine carbamoyltransferase, catabolic
    Species: MYCOPLASMA PENETRANS [TaxId:28227]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EVF5 (23-364)
      • expression tag (21-22)
    Domains in SCOPe 2.08: d4amua1, d4amua2, d4amua3
  • Chain 'B':
    Compound: ornithine carbamoyltransferase, catabolic
    Species: MYCOPLASMA PENETRANS [TaxId:28227]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EVF5 (23-364)
      • expression tag (21-22)
    Domains in SCOPe 2.08: d4amub1, d4amub2, d4amub3
  • Chain 'C':
    Compound: ornithine carbamoyltransferase, catabolic
    Species: MYCOPLASMA PENETRANS [TaxId:28227]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EVF5 (23-364)
      • expression tag (21-22)
    Domains in SCOPe 2.08: d4amuc1, d4amuc2, d4amuc3
  • Chain 'D':
    Compound: ornithine carbamoyltransferase, catabolic
    Species: MYCOPLASMA PENETRANS [TaxId:28227]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8EVF5 (23-364)
      • expression tag (21-22)
    Domains in SCOPe 2.08: d4amud1, d4amud2, d4amud3
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4amuA (A:)
    mghhhhhhhhhhssghiddddkhmpvnlkgrsldsllnftteevqhlidlsidlkkakyq
    glhinnrplvgkniailfqkdstrtrcafevaasdlgagvtyigpsgsnmgkkesiedta
    kvlgrfydgiefrgfaqsdvdalvkysgvpvwngltddehptqiiadfmtmkekfgnlkn
    kkivfigdyknnvgvstmigaafngmhvvmcgpdnykneidknvlakcielfkrnggslr
    fstdkilaaqdadviytdvwvslgepfelfdkrigelknfqvdmnmikaakndviflhcl
    pafhddhtsfskevattlgakypivakgemevtdevfqslhnkafdqaenrmhsikaiil
    stigy
    

    Sequence, based on observed residues (ATOM records): (download)
    >4amuA (A:)
    khmpvnlkgrsldsllnftteevqhlidlsidlkkakyqglhinnrplvgkniailfqkd
    strtrcafevaasdlgagvtyigpsgsnmgkkesiedtakvlgrfydgiefrgfaqsdvd
    alvkysgvpvwngltddehptqiiadfmtmkekfgnlknkkivfigdyknnvgvstmiga
    afngmhvvmcgpdnykneidknvlakcielfkrnggslrfstdkilaaqdadviytdvwv
    slgepfelfdkrigelknfqvdmnmikaakndviflhclpafhddhtsfskevattlgak
    ypivakgemevtdevfqslhnkafdqaenrmhsikaiilstigy
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >4amuB (B:)
    mghhhhhhhhhhssghiddddkhmpvnlkgrsldsllnftteevqhlidlsidlkkakyq
    glhinnrplvgkniailfqkdstrtrcafevaasdlgagvtyigpsgsnmgkkesiedta
    kvlgrfydgiefrgfaqsdvdalvkysgvpvwngltddehptqiiadfmtmkekfgnlkn
    kkivfigdyknnvgvstmigaafngmhvvmcgpdnykneidknvlakcielfkrnggslr
    fstdkilaaqdadviytdvwvslgepfelfdkrigelknfqvdmnmikaakndviflhcl
    pafhddhtsfskevattlgakypivakgemevtdevfqslhnkafdqaenrmhsikaiil
    stigy
    

    Sequence, based on observed residues (ATOM records): (download)
    >4amuB (B:)
    khmpvnlkgrsldsllnftteevqhlidlsidlkkakyqglhinnrplvgkniailfqkd
    strtrcafevaasdlgagvtyigpsgsnmgkkesiedtakvlgrfydgiefrgfaqsdvd
    alvkysgvpvwngltddehptqiiadfmtmkekfgnlknkkivfigdyknnvgvstmiga
    afngmhvvmcgpdnykneidknvlakcielfkrnggslrfstdkilaaqdadviytdvwv
    slgepfelfdkrigelknfqvdmnmikaakndviflhclpafhddhtsfskevattlgak
    ypivakgemevtdevfqslhnkafdqaenrmhsikaiilstigy
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >4amuC (C:)
    mghhhhhhhhhhssghiddddkhmpvnlkgrsldsllnftteevqhlidlsidlkkakyq
    glhinnrplvgkniailfqkdstrtrcafevaasdlgagvtyigpsgsnmgkkesiedta
    kvlgrfydgiefrgfaqsdvdalvkysgvpvwngltddehptqiiadfmtmkekfgnlkn
    kkivfigdyknnvgvstmigaafngmhvvmcgpdnykneidknvlakcielfkrnggslr
    fstdkilaaqdadviytdvwvslgepfelfdkrigelknfqvdmnmikaakndviflhcl
    pafhddhtsfskevattlgakypivakgemevtdevfqslhnkafdqaenrmhsikaiil
    stigy
    

    Sequence, based on observed residues (ATOM records): (download)
    >4amuC (C:)
    khmpvnlkgrsldsllnftteevqhlidlsidlkkakyqglhinnrplvgkniailfqkd
    strtrcafevaasdlgagvtyigpsgsnmgkkesiedtakvlgrfydgiefrgfaqsdvd
    alvkysgvpvwngltddehptqiiadfmtmkekfgnlknkkivfigdyknnvgvstmiga
    afngmhvvmcgpdnykneidknvlakcielfkrnggslrfstdkilaaqdadviytdvwv
    slgepfelfdkrigelknfqvdmnmikaakndviflhclpafhddhtsfskevattlgak
    ypivakgemevtdevfqslhnkafdqaenrmhsikaiilstigy
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >4amuD (D:)
    mghhhhhhhhhhssghiddddkhmpvnlkgrsldsllnftteevqhlidlsidlkkakyq
    glhinnrplvgkniailfqkdstrtrcafevaasdlgagvtyigpsgsnmgkkesiedta
    kvlgrfydgiefrgfaqsdvdalvkysgvpvwngltddehptqiiadfmtmkekfgnlkn
    kkivfigdyknnvgvstmigaafngmhvvmcgpdnykneidknvlakcielfkrnggslr
    fstdkilaaqdadviytdvwvslgepfelfdkrigelknfqvdmnmikaakndviflhcl
    pafhddhtsfskevattlgakypivakgemevtdevfqslhnkafdqaenrmhsikaiil
    stigy
    

    Sequence, based on observed residues (ATOM records): (download)
    >4amuD (D:)
    khmpvnlkgrsldsllnftteevqhlidlsidlkkakyqglhinnrplvgkniailfqkd
    strtrcafevaasdlgagvtyigpsgsnmgkkesiedtakvlgrfydgiefrgfaqsdvd
    alvkysgvpvwngltddehptqiiadfmtmkekfgnlknkkivfigdyknnvgvstmiga
    afngmhvvmcgpdnykneidknvlakcielfkrnggslrfstdkilaaqdadviytdvwv
    slgepfelfdkrigelknfqvdmnmikaakndviflhclpafhddhtsfskevattlgak
    ypivakgemevtdevfqslhnkafdqaenrmhsikaiilstigy