SCOPe 2.08: Structural Classification of Proteins

PDB entry 4aca

View 4aca on RCSB PDB site
Description: crystal structure of translation elongation factor selb from methanococcus maripaludis, apo form
Class: translation
Keywords: selenocysteine, translation, secis element, ef-sec, sec-tRNA(sec)
Deposited on 2011-12-14, released 2012-11-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-11-07, with a file datestamp of 2012-11-02.
Experiment type: XRAY
Resolution: 3.15 Å
R-factor: 0.1743
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: translation elongation factor selb
Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8J307 (14-481)
  - expression tag (13)
Domains in SCOPe 2.08: d4acaa1, d4acaa2, d4acaa3, d4acaa4, d4acaa5
Chain 'B':
Compound: translation elongation factor selb
Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8J307 (14-481)
Domains in SCOPe 2.08: d4acab1, d4acab2, d4acab3, d4acab4
Chain 'C':
Compound: translation elongation factor selb
Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8J307 (14-481)
  - expression tag (11-13)
Domains in SCOPe 2.08: d4acac1, d4acac2, d4acac3, d4acac4, d4acac5
Chain 'D':
Compound: translation elongation factor selb
Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
Database cross-references and differences (RAF-indexed):
- Uniprot Q8J307 (Start-481)
Domains in SCOPe 2.08: d4acad1, d4acad2, d4acad3, d4acad4
Heterogens: SO4, DXC, 5GP

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>4acaA (A:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

Sequence, based on observed residues (ATOM records): (download)

>4acaA (A:)
hmdfkninlgifghidhgkttlskvlteigfsafklenyritlvdapghadliravvsaa
diidlalivvdakegpktqtgehmlildhfnipiivvitksdnagteeikrtemimksil
qsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldhafpikgag
tvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmaiqgvdakqi
yrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpavavpfkkvtf
gkteeniilnevisgnecycafeleekvlaevgdrvlitrldlppttlricghglieefk
pikdlnikkevlregkvkidkgrtvidglaqskvaaekligeeisiegkdivgkikgtfg
tkglltaefsgnvenrdkvilnrlrrwg

Chain 'B':
Sequence, based on SEQRES records: (download)

>4acaB (B:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

Sequence, based on observed residues (ATOM records): (download)

>4acaB (B:)
mdfkninlgifghidhgkttlskvlteiakrgitidigfsafklenyritlvdapghadl
iravvsaadiidlalivvdakegpktqtgehmlildhfnipiivvitksdnagteeikrt
emimksilqsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldh
afpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmai
qgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpava
vpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrldlppttlricg
hglieefkpikdlnikkevlregkvkidkgrtvidglaqskvaaekligeeisiegkdiv
gkikgtfgtkglltaefsgnvenrdkvilnrlrrwg

Chain 'C':
Sequence, based on SEQRES records: (download)

>4acaC (C:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

Sequence, based on observed residues (ATOM records): (download)

>4acaC (C:)
rphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgitidigfsafkle
nyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipiivv
itksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnnae
iirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfke
svmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkm
kvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvl
itrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvidglaqskvaae
kligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrrwg

Chain 'D':
Sequence, based on SEQRES records: (download)

>4acaD (D:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

Sequence, based on observed residues (ATOM records): (download)

>4acaD (D:)
dfkninlgifghidhgkttlskvlteiastsahdklpesqkrgitidigfsafklenyri
tlvdapghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipiivvitks
dnagteeikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnnaeiirn
tesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvme
akagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhl
nvgmlivpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrl
dlppttlricghglieefkpikdlnikkevlregkvkidkgrtvidglaqskvaaeklig
eeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrrwg