PDB entry 4ac9

View 4ac9 on RCSB PDB site
Description: crystal structure of translation elongation factor selb from methanococcus maripaludis in complex with GDP
Class: translation
Keywords: selenocysteine, translation, secis element, ef-sec, sec-tRNA(sec)
Deposited on 2011-12-14, released 2012-08-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-08-22, with a file datestamp of 2012-08-17.
Experiment type: XRAY
Resolution: 3.03 Å
R-factor: 0.1913
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: mj0495-like protein
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8J307 (14-481)
      • expression tag (13)
    Domains in SCOPe 2.08: d4ac9a1, d4ac9a2, d4ac9a3, d4ac9a4, d4ac9a5
  • Chain 'B':
    Compound: mj0495-like protein
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ac9b1, d4ac9b2, d4ac9b3, d4ac9b4
  • Chain 'C':
    Compound: mj0495-like protein
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8J307 (14-481)
      • expression tag (11-13)
    Domains in SCOPe 2.08: d4ac9c1, d4ac9c2, d4ac9c3, d4ac9c4, d4ac9c5
  • Chain 'D':
    Compound: mj0495-like protein
    Species: METHANOCOCCUS MARIPALUDIS [TaxId:39152]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4ac9d1, d4ac9d2, d4ac9d3, d4ac9d4
  • Heterogens: GDP, MG, SO4, DXC, 5GP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4ac9A (A:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ac9A (A:)
hmdfkninlgifghidhgkttlskvlteigfsafklenyritlvdapghadliravvsaa
diidlalivvdakegpktqtgehmlildhfnipiivvitksdnagteeikrtemimksil
qsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldhafpikgag
tvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmaiqgvdakqi
yrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpavavpfkkvtf
gkteeniilnevisgnecycafeleekvlaevgdrvlitrldlppttlricghglieefk
pikdlnikkevlregkvkidkgrtvidglaqskvaaekligeeisiegkdivgkikgtfg
tkglltaefsgnvenrdkvilnrlrrwg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4ac9B (B:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ac9B (B:)
mdfkninlgifghidhgkttlskvlteiakrgitidigfsafklenyritlvdapghadl
iravvsaadiidlalivvdakegpktqtgehmlildhfnipiivvitksdnagteeikrt
emimksilqsthnlknssiipisaktgfgvdelknliittlnnaeiirntesyfkmpldh
afpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvmeakagdrvgmai
qgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhlnvgmlivpava
vpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrldlppttlricg
hglieefkpikdlnikkevlregkvkidkgrtvidglaqskvaaekligeeisiegkdiv
gkikgtfgtkglltaefsgnvenrdkvilnrlrrwg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4ac9C (C:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ac9C (C:)
rphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgitidigfsafkle
nyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipiivv
itksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnnae
iirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfke
svmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkm
kvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvl
itrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvidglaqskvaae
kligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrrwg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >4ac9D (D:)
mhhhhhhsiegrphmdfkninlgifghidhgkttlskvlteiastsahdklpesqkrgit
idigfsafklenyritlvdapghadliravvsaadiidlalivvdakegpktqtgehmli
ldhfnipiivvitksdnagteeikrtemimksilqsthnlknssiipisaktgfgvdelk
nliittlnnaeiirntesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinms
tkvrsiqyfkesvmeakagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikis
difkynltpkmkvhlnvgmlivpavavpfkkvtfgkteeniilnevisgnecycafelee
kvlaevgdrvlitrldlppttlricghglieefkpikdlnikkevlregkvkidkgrtvi
dglaqskvaaekligeeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrr
wg

    Sequence, based on observed residues (ATOM records): (download) 
    >4ac9D (D:)
dfkninlgifghidhgkttlskvlteiastsahdklpesqkrgitidigfsafklenyri
tlvdapghadliravvsaadiidlalivvdakegpktqtgehmlildhfnipiivvitks
dnagteeikrtemimksilqsthnlknssiipisaktgfgvdelknliittlnnaeiirn
tesyfkmpldhafpikgagtvvtgtinkgivkvgdelkvlpinmstkvrsiqyfkesvme
akagdrvgmaiqgvdakqiyrgciltskdtklqtvdkivakikisdifkynltpkmkvhl
nvgmlivpavavpfkkvtfgkteeniilnevisgnecycafeleekvlaevgdrvlitrl
dlppttlricghglieefkpikdlnikkevlregkvkidkgrtvidglaqskvaaeklig
eeisiegkdivgkikgtfgtkglltaefsgnvenrdkvilnrlrrwg