PDB entry 4a8q

View 4a8q on RCSB PDB site
Description: Non-Catalytic Ions Direct the RNA-Dependent RNA Polymerase of Bacterial dsRNA virus phi6 from De Novo Initiation to Elongation
Class: transferase/DNA
Keywords: transferase-DNA complex, viral polymerase
Deposited on 2011-11-21, released 2012-07-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-07-04, with a file datestamp of 2012-06-29.
Experiment type: XRAY
Resolution: 3.06 Å
R-factor: 0.2056
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA-directed RNA polymerase
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11124 (Start-664)
      • conflict (456)
      • conflict (634)
    Domains in SCOPe 2.08: d4a8qa_
  • Chain 'B':
    Compound: RNA-directed RNA polymerase
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11124 (Start-664)
      • conflict (456)
      • conflict (634)
    Domains in SCOPe 2.08: d4a8qb_
  • Chain 'C':
    Compound: RNA-directed RNA polymerase
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P11124 (Start-664)
      • conflict (456)
    Domains in SCOPe 2.08: d4a8qc_
  • Chain 'F':
    Compound: 5'-d(*dtp*tp*cp*gp*cp*gp)-3'
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'G':
    Compound: 5'-d(*dtp*tp*cp*gp*cp*gp)-3'
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Chain 'H':
    Compound: 5'-d(*dtp*tp*cp*gp*cp*gp)-3'
    Species: PSEUDOMONAS PHAGE PHI6 [TaxId:10879]
  • Heterogens: MG, ATP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >4a8qA (A:)
mprrapafplsdikaqmlfannikaqqaskrsfkegaietyegllsvdprflsfknelsr
yltdhfpanvdeygrvygngvrtnffgmrhmngfpmipatwplasnlkkradadladgpv
serdnllfraavrlmfsdlepvplkirkgsstcipyfsndmgtkieiaeralekaeeagn
lmlqgkfddayqlhqmggayyvvyraqstdaitldpktgkfvskdrmvadfeyavtggeq
gslfaaskdasrlkeqygidvpdgffcerrrtamggpfalnapimavaqpvrnkiyskya
ytfhhttrlnkeekvkewslcvatdvsdhdtfwpgwlrdlicdellnmgyapwwvklfet
slklpvyvgapapeqghtllgdpsnpdlevglssgqgatdlmgtllmsitylvmqldhta
phlnsrikdmpsacrfldsywqgheeirqisksddamlgwtkgralvgghrlfemlkegk
vnpspymkisyehggaflgdillydsrrepgsaifvgninsmlnnqfspeygvqsgvrdr
skrkrpfpglawasmkdtygacpiysdvleaiercwwnafgesyrayredmlkrdtlels
ryvasmarqaglaeltpidlevladpnklqykwtqadvsanihevlmhgvsvekterflr
svmpr

    Sequence, based on observed residues (ATOM records): (download) 
    >4a8qA (A:)
prrapafplsdikaqmlfannikaqqaskrsfkegaietyegllsvdprflsfknelsry
ltdhfpanvdeygrvygngvrtnffgmrhmngfpmipatwplasnlkkradadladgpvs
erdnllfraavrlmfsdlepvplkirkgsstcipyfsndmgtkieiaeralekaeeagnl
mlqgkfddayqlhqmggayyvvyraqstdaitldpktgkfvskdrmvadfeyavtggeqg
slfaaskdasrlkeqygidvpdgffcerrrtamggpfalnapimavaqpvrnkiyskyay
tfhhttrlnkeekvkewslcvatdvsdhdtfwpgwlrdlicdellnmgyapwwvklfets
lklpvyvgapapeqghtllgdpsnpdlevglssgqgatdlmgtllmsitylvmqldhtap
hlnsrikdmpsacrfldsywqgheeirqisksddamlgwtkgralvgghrlfemlkegkv
npspymkisyehggaflgdillydsrrepgsaifvgninsmlnnqfspeygvqsgvrdrs
krkrpfpglawasmkdtygacpiysdvleaiercwwnafgesyrayredmlkrdtlelsr
yvasmarqaglaeltpidlevladpnklqykwtqadvsanihevlmhgvsvekterflrs
vmpr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4a8qB (B:)
mprrapafplsdikaqmlfannikaqqaskrsfkegaietyegllsvdprflsfknelsr
yltdhfpanvdeygrvygngvrtnffgmrhmngfpmipatwplasnlkkradadladgpv
serdnllfraavrlmfsdlepvplkirkgsstcipyfsndmgtkieiaeralekaeeagn
lmlqgkfddayqlhqmggayyvvyraqstdaitldpktgkfvskdrmvadfeyavtggeq
gslfaaskdasrlkeqygidvpdgffcerrrtamggpfalnapimavaqpvrnkiyskya
ytfhhttrlnkeekvkewslcvatdvsdhdtfwpgwlrdlicdellnmgyapwwvklfet
slklpvyvgapapeqghtllgdpsnpdlevglssgqgatdlmgtllmsitylvmqldhta
phlnsrikdmpsacrfldsywqgheeirqisksddamlgwtkgralvgghrlfemlkegk
vnpspymkisyehggaflgdillydsrrepgsaifvgninsmlnnqfspeygvqsgvrdr
skrkrpfpglawasmkdtygacpiysdvleaiercwwnafgesyrayredmlkrdtlels
ryvasmarqaglaeltpidlevladpnklqykwtqadvsanihevlmhgvsvekterflr
svmpr

    Sequence, based on observed residues (ATOM records): (download) 
    >4a8qB (B:)
prrapafplsdikaqmlfannikaqqaskrsfkegaietyegllsvdprflsfknelsry
ltdhfpanvdeygrvygngvrtnffgmrhmngfpmipatwplasnlkkradadladgpvs
erdnllfraavrlmfsdlepvplkirkgsstcipyfsndmgtkieiaeralekaeeagnl
mlqgkfddayqlhqmggayyvvyraqstdaitldpktgkfvskdrmvadfeyavtggeqg
slfaaskdasrlkeqygidvpdgffcerrrtamggpfalnapimavaqpvrnkiyskyay
tfhhttrlnkeekvkewslcvatdvsdhdtfwpgwlrdlicdellnmgyapwwvklfets
lklpvyvgapapeqghtllgdpsnpdlevglssgqgatdlmgtllmsitylvmqldhtap
hlnsrikdmpsacrfldsywqgheeirqisksddamlgwtkgralvgghrlfemlkegkv
npspymkisyehggaflgdillydsrrepgsaifvgninsmlnnqfspeygvqsgvrdrs
krkrpfpglawasmkdtygacpiysdvleaiercwwnafgesyrayredmlkrdtlelsr
yvasmarqaglaeltpidlevladpnklqykwtqadvsanihevlmhgvsvekterflrs
vmpr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >4a8qC (C:)
mprrapafplsdikaqmlfannikaqqaskrsfkegaietyegllsvdprflsfknelsr
yltdhfpanvdeygrvygngvrtnffgmrhmngfpmipatwplasnlkkradadladgpv
serdnllfraavrlmfsdlepvplkirkgsstcipyfsndmgtkieiaeralekaeeagn
lmlqgkfddayqlhqmggayyvvyraqstdaitldpktgkfvskdrmvadfeyavtggeq
gslfaaskdasrlkeqygidvpdgffcerrrtamggpfalnapimavaqpvrnkiyskya
ytfhhttrlnkeekvkewslcvatdvsdhdtfwpgwlrdlicdellnmgyapwwvklfet
slklpvyvgapapeqghtllgdpsnpdlevglssgqgatdlmgtllmsitylvmqldhta
phlnsrikdmpsacrfldsywqgheeirqisksddamlgwtkgralvgghrlfemlkegk
vnpspymkisyehggaflgdillydsrrepgsaifvgninsmlnnqfspeygvqsgvrdr
skrkrpfpglawasmkdtygacpiysdvleaiercwwnafgesyrayredmlkrdtlels
ryvasmarqaglaeltpidlevladpnklqykwtqadvsanihevlmhgvsvekterflr
svmpr

    Sequence, based on observed residues (ATOM records): (download) 
    >4a8qC (C:)
prrapafplsdikaqmlfannikaqqaskrsfkegaietyegllsvdprflsfknelsry
ltdhfpanvdeygrvygngvrtnffgmrhmngfpmipatwplasnlkkradadladgpvs
erdnllfraavrlmfsdlepvplkirkgsstcipyfsndmgtkieiaeralekaeeagnl
mlqgkfddayqlhqmggayyvvyraqstdaitldpktgkfvskdrmvadfeyavtggeqg
slfaaskdasrlkeqygidvpdgffcerrrtamggpfalnapimavaqpvrnkiyskyay
tfhhttrlnkeekvkewslcvatdvsdhdtfwpgwlrdlicdellnmgyapwwvklfets
lklpvyvgapapeqghtllgdpsnpdlevglssgqgatdlmgtllmsitylvmqldhtap
hlnsrikdmpsacrfldsywqgheeirqisksddamlgwtkgralvgghrlfemlkegkv
npspymkisyehggaflgdillydsrrepgsaifvgninsmlnnqfspeygvqsgvrdrs
krkrpfpglawasmkdtygacpiysdvleaiercwwnafgesyrayredmlkrdtlelsr
yvasmaeltpidlevladpnklqyhevlmhgvsvekterflrsvmpr

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.