PDB entry 4a76
View 4a76 on RCSB PDB site
Description: The Lin28b Cold shock domain in complex with heptathymidine
Class: chaperone/DNA
Keywords: chaperone-DNA complex
Deposited on
2011-11-11, released
2012-09-05
The last revision prior to the SCOPe 2.05 freeze date was dated
2012-09-05, with a file datestamp of
2012-08-31.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: 0.20925
AEROSPACI score: 0.43
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: lin28 cold shock domain
Species: Xenopus (Silurana) tropicalis [TaxId:8364]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4a76a_ - Chain 'B':
Compound: 5'-d(*tp*tp*tp*tp*tp*tp*tp)-3'
- Chain 'C':
Compound: lin28 cold shock domain
Species: Xenopus (Silurana) tropicalis [TaxId:8364]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4a76c_ - Chain 'D':
Compound: 5'-d(*tp*tp*tp*tp*tp*tp*tp)-3'
- Chain 'E':
Compound: lin28 cold shock domain
Species: Xenopus (Silurana) tropicalis [TaxId:8364]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4a76e_ - Chain 'F':
Compound: 5'-d(*tp*tp*tp*tp*tp*tp*tp)-3'
- Chain 'G':
Compound: lin28 cold shock domain
Species: Xenopus (Silurana) tropicalis [TaxId:8364]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d4a76g_ - Chain 'H':
Compound: 5'-d(*tp*tp*tp*tp*tp*tp*tp)-3'
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>4a76A (A:)
gsdpqvlrgsghckwfnvrmgfgfismtsregsplenpvdvfvhqsklymegfrslkege
pveftfkksskgfeslrvtgpggnpclgne
Sequence, based on observed residues (ATOM records): (download)
>4a76A (A:)
pqvlrgsghckwfnvrmgfgfismtsregsplenpvdvfvhqsklymegfrslkegepve
ftfkksskgfeslrvtgpggnpclgn
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence, based on SEQRES records: (download)
>4a76C (C:)
gsdpqvlrgsghckwfnvrmgfgfismtsregsplenpvdvfvhqsklymegfrslkege
pveftfkksskgfeslrvtgpggnpclgne
Sequence, based on observed residues (ATOM records): (download)
>4a76C (C:)
qvlrgsghckwfnvrmgfgfismtsregsplenpvdvfvhqsklymegfrslkegepvef
tfkksskgfeslrvtgpggnpclgn
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>4a76E (E:)
gsdpqvlrgsghckwfnvrmgfgfismtsregsplenpvdvfvhqsklymegfrslkege
pveftfkksskgfeslrvtgpggnpclgne
Sequence, based on observed residues (ATOM records): (download)
>4a76E (E:)
dpqvlrgsghckwfnvrmgfgfismtsregsplenpvdvfvhqsklymegfrslkegepv
eftfkksskgfeslrvtgpggnpclgn
- Chain 'F':
No sequence available.
- Chain 'G':
Sequence, based on SEQRES records: (download)
>4a76G (G:)
gsdpqvlrgsghckwfnvrmgfgfismtsregsplenpvdvfvhqsklymegfrslkege
pveftfkksskgfeslrvtgpggnpclgne
Sequence, based on observed residues (ATOM records): (download)
>4a76G (G:)
sdpqvlrgsghckwfnvrmgfgfismtsregsplenpvdvfvhqsklymegfrslkegep
veftfkksskgfeslrvtgpggnpclgn
- Chain 'H':
No sequence available.