PDB entry 4a6y

View 4a6y on RCSB PDB site
Description: crystal structure of fab fragment of anti-(4-hydroxy-3-nitrophenyl) -acetyl murine germline antibody bbe6.12h3
Class: immune system
Keywords: immune system, antibody multispecificity, humoral immune system, complementarity determining region flexibility
Deposited on 2011-11-10, released 2012-02-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-02-15, with a file datestamp of 2012-02-10.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.24
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: antibody bbe6.12h3 light chain
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4A6Y (0-210)
    Domains in SCOPe 2.08: d4a6ya1, d4a6ya2
  • Chain 'B':
    Compound: antibody bbe6.12h3 heavy chain
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4A6Y (Start-219)
    Domains in SCOPe 2.08: d4a6yb_
  • Chain 'H':
    Compound: antibody bbe6.12h3 heavy chain
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4A6Y (0-219)
    Domains in SCOPe 2.08: d4a6yh_
  • Chain 'L':
    Compound: antibody bbe6.12h3 light chain
    Species: MUS MUSCULUS [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 4A6Y (0-210)
    Domains in SCOPe 2.08: d4a6yl1, d4a6yl2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4a6yA (A:)
qavvtqesalttspgetvtltcrsstgavttsnyanwvqekpdhlftgliggtnnrapgv
parfsgsligdkaaltitgaqtedeaiyfcalwysnhwvfgggtgltvlgqpksspsvtl
fppsseeletnkatlvctitdfypgvvtvdwkvdgtpvtqgmettqpskqsnnkymassy
ltltarawerhssyscqvtheghtvekslsr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >4a6yB (B:)
tvqlqqpgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
nekfkskatltvdkpsstaymqlssltsedsavyycarydyyggsyfdywgqgttltvss
akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsspwpsetvtcnvahpasstkvdkkivpr

    Sequence, based on observed residues (ATOM records): (download) 
    >4a6yB (B:)
vqlqqpgaelvkpgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtayn
ekfkskatltvdkpsstaymqlssltsedsavyycarydyyggsyfdywgqgttltvssa
kttppsvyplapgssmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlss
svtvpsspwpsetvtcnvahpasstkvdkkivpr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >4a6yH (H:)
tvqlqqpkaelvapgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
nekfkskatltvdkpsstaymqlssltsedsavyycarydyyggsyfdywgqgttltvss
akttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsd
lytlsssvtvpsspwpsetvtcnvahpasstkvdkkivpr

    Sequence, based on observed residues (ATOM records): (download) 
    >4a6yH (H:)
tvqlqqpkaelvapgasvklsckasgytftsywmhwvkqrpgrglewigridpnsggtay
nekfkskatltvdkpsstaymqlssltsedsavyycarydyyggsyfdywgqgttltvss
akttppsvyplapgssmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytls
ssvtvpsspwpsetvtcnvahpasstkvdkkivpr

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >4a6yL (L:)
qavvtqesalttspgetvtlkcasstgavttsnyanwvqekpdhlftgliggtnnrapgv
parfsgsligdkaaltitgaqtedeaiyfcalwysnhwvfgggtkltvlgqpksspsvtl
fppsseeletnkatlvctitdfypgvvtvdwkvdgtpvtqgmettqpskqsnnkymassy
ltltarawerhssyscqvtheghtvekslsr