PDB entry 487d
View 487d on RCSB PDB site
Description: seven ribosomal proteins fitted to a cryo-electron microscopic map of the large 50s subunit at 7.5 angstroms resolution
Class: ribosome
Keywords: ribosome, large ribosomal subunit, ribosomal protein, protein biosynthesis, em-reconstruction, atomic structure, 3d arrangement, fitting
Deposited on
2000-02-23, released
2000-04-10
The last revision prior to the SCOPe 2.01 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: EM
Resolution: 7.5 Å
R-factor: N/A
AEROSPACI score: -0.01
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: protein (50s l1 ribosomal protein)
Species: Thermus thermophilus [TaxId:274]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d487dh_ - Chain 'I':
Compound: protein (50s l2 ribosomal protein)
Species: Geobacillus stearothermophilus [TaxId:1422]
Database cross-references and differences (RAF-indexed):
- Uniprot P04257 (0-134)
- engineered (53)
- engineered (56)
- engineered (122)
Domains in SCOPe 2.01: d487di_ - Chain 'J':
Compound: protein (50s l6 ribosomal protein)
Species: Geobacillus stearothermophilus [TaxId:1422]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d487dj_ - Chain 'K':
Compound: protein (50s l9 ribosomal protein)
Species: Geobacillus stearothermophilus [TaxId:1422]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d487dk_ - Chain 'L':
Compound: protein (50s l11 ribosomal protein)
Species: Thermotoga maritima [TaxId:2336]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d487dl_ - Chain 'M':
Compound: protein (50s l14 ribosomal protein)
Species: Geobacillus stearothermophilus [TaxId:1422]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d487dm_ - Chain 'N':
Compound: protein (50s l25 ribosomal protein)
Species: Escherichia coli [TaxId:562]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d487dn_ - Heterogens: NH2, FMT
PDB Chain Sequences:
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>487dH (H:)
kryrallekvdpnkiytideaahlvkelatakfdetvevhaklgidprrsdqnvrgtvsl
phglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdvmgavg
sklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkacfppek
ladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs
- Chain 'I':
Sequence; same for both SEQRES and ATOM records: (download)
>487dI (I:)
qyriidfkrdkdgipgrvatieydpnrsanialinyadgekryiiapknlkvgmeimsgp
dadikignalplenipvgtlvhnielkpgrggqlvraagtsaqvlgkegkyvivrlasge
vrmilgkcratvgev
- Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
>487dJ (J:)
pieipagvtvtvngntvtvkgpkgeltrtfhpdmtitvegnvitvtrpsdekhhralhgt
trsllanmvegvskgyekalelvgvgyraskqgkklvlsvgyshpveiepeegleievps
qtkiivkgadkqrvgelaaniravrppepykgkgiryegelvrl
- Chain 'K':
Sequence; same for both SEQRES and ATOM records: (download)
>487dK (K:)
mkviflkdvkgkgkkgeiknvadgyannflfkqglaieatpanlkaleaqkqkeqrqaae
elanakklkeqlekltvtipakageggrlfgsitskqiaeslqaqhglkldkrkielada
iralgytnvpvklhpevtatlkvhvteqk
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>487dL (L:)
qiklqlpagkatpappvgpalgqhgvnimefckrfnaetadkagmilpvvitvyedksft
fiiktppasfllkkaagiekgssepkrkivgkvtrkqieeiaktkmpdlnansleaamki
iegtaksmgievv
- Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)
>487dM (M:)
miqqesrlkvadnsgarevlvikvlggsgrryanigdvvvatvkdatpggvvkkgqvvka
vvvrtkrgvrrpdgsyirfdenacviirddksprgtrifgpvarelrdkdfmkiislape
vi
- Chain 'N':
Sequence; same for both SEQRES and ATOM records: (download)
>487dN (N:)
mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
ltivvdgkeikvkaqdvqrhpykpklqhidfvra