PDB entry 487d

View 487d on RCSB PDB site
Description: seven ribosomal proteins fitted to a cryo-electron microscopic map of the large 50s subunit at 7.5 angstroms resolution
Deposited on 2000-02-23, released 2000-04-10
The last revision was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: EM
Resolution: 7.5 Å
R-factor: N/A
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: protein (50s l1 ribosomal protein)
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P27150 (0-223)
      • conflict (174)
  • Chain 'I':
    Compound: protein (50s l2 ribosomal protein)
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P04257 (0-134)
      • engineered (53)
      • engineered (56)
      • engineered (122)
  • Chain 'J':
    Compound: protein (50s l6 ribosomal protein)
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: protein (50s l9 ribosomal protein)
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: protein (50s l11 ribosomal protein)
    Species: Thermotoga maritima [TaxId:2336]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: protein (50s l14 ribosomal protein)
    Species: Geobacillus stearothermophilus [TaxId:1422]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: protein (50s l25 ribosomal protein)
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NH2, FMT

PDB Chain Sequences:
This PDB entry is not classified in SCOP 1.55, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >487dH (H:)
    kryrallekvdpnkiytideaahlvkelatakfdetvevhaklgidprrsdqnvrgtvsl
    phglgkqvrvlaiakgekikeaeeagadyvggeeiiqkildgwmdfdavvatpdvmgavg
    sklgrilgprgllpnpkagtvgfnigeiireikagriefrndktgaihapvgkacfppek
    ladnirafiraleahkpegakgtflrsvyvtttmgpsvrinphs
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >487dI (I:)
    qyriidfkrdkdgipgrvatieydpnrsanialinyadgekryiiapknlkvgmeimsgp
    dadikignalplenipvgtlvhnielkpgrggqlvraagtsaqvlgkegkyvivrlasge
    vrmilgkcratvgev
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >487dJ (J:)
    pieipagvtvtvngntvtvkgpkgeltrtfhpdmtitvegnvitvtrpsdekhhralhgt
    trsllanmvegvskgyekalelvgvgyraskqgkklvlsvgyshpveiepeegleievps
    qtkiivkgadkqrvgelaaniravrppepykgkgiryegelvrl
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >487dK (K:)
    mkviflkdvkgkgkkgeiknvadgyannflfkqglaieatpanlkaleaqkqkeqrqaae
    elanakklkeqlekltvtipakageggrlfgsitskqiaeslqaqhglkldkrkielada
    iralgytnvpvklhpevtatlkvhvteqk
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >487dL (L:)
    qiklqlpagkatpappvgpalgqhgvnimefckrfnaetadkagmilpvvitvyedksft
    fiiktppasfllkkaagiekgssepkrkivgkvtrkqieeiaktkmpdlnansleaamki
    iegtaksmgievv
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >487dM (M:)
    miqqesrlkvadnsgarevlvikvlggsgrryanigdvvvatvkdatpggvvkkgqvvka
    vvvrtkrgvrrpdgsyirfdenacviirddksprgtrifgpvarelrdkdfmkiislape
    vi
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >487dN (N:)
    mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
    ltivvdgkeikvkaqdvqrhpykpklqhidfvra