PDB entry 3zuj
View 3zuj on RCSB PDB site
Description: Padron on (fluorescent) ABcis
Class: fluorescent protein
Keywords: gfp variants, fluorescent protein, positive photoswitching, fps, rsfps, cryo-probe, intermediate state, isomerization
Deposited on
2011-07-19, released
2011-08-10
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-10-23, with a file datestamp of
2019-10-18.
Experiment type: XRAY
Resolution: 2.35 Å
R-factor: N/A
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Fluorescent protein Dronpa
Species: Echinophyllia sp. SC22 [TaxId:301887]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5TLG6 (0-215)
- conflict (57-58)
- chromophore (61)
- conflict (92)
- conflict (139)
- conflict (153)
- conflict (155)
- conflict (157)
- conflict (188)
Domains in SCOPe 2.08: d3zuja_ - Chain 'B':
Compound: Fluorescent protein Dronpa
Species: Echinophyllia sp. SC22 [TaxId:301887]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5TLG6 (0-215)
- conflict (57-58)
- chromophore (61)
- conflict (92)
- conflict (139)
- conflict (153)
- conflict (155)
- conflict (157)
- conflict (188)
Domains in SCOPe 2.08: d3zujb_ - Chain 'C':
Compound: Fluorescent protein Dronpa
Species: Echinophyllia sp. SC22 [TaxId:301887]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5TLG6 (Start-215)
- conflict (57-58)
- chromophore (61)
- conflict (92)
- conflict (139)
- conflict (153)
- conflict (155)
- conflict (157)
- conflict (188)
Domains in SCOPe 2.08: d3zujc_ - Chain 'D':
Compound: Fluorescent protein Dronpa
Species: Echinophyllia sp. SC22 [TaxId:301887]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5TLG6 (Start-215)
- conflict (57-58)
- chromophore (61)
- conflict (92)
- conflict (139)
- conflict (153)
- conflict (155)
- conflict (157)
- conflict (188)
Domains in SCOPe 2.08: d3zujd_ - Chain 'E':
Compound: Fluorescent protein Dronpa
Species: Echinophyllia sp. SC22 [TaxId:301887]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5TLG6 (0-215)
- conflict (57-58)
- chromophore (61)
- conflict (92)
- conflict (139)
- conflict (153)
- conflict (155)
- conflict (157)
- conflict (188)
Domains in SCOPe 2.08: d3zuje_ - Chain 'F':
Compound: Fluorescent protein Dronpa
Species: Echinophyllia sp. SC22 [TaxId:301887]
Database cross-references and differences (RAF-indexed):
- Uniprot Q5TLG6 (0-215)
- conflict (57-58)
- chromophore (61)
- conflict (92)
- conflict (139)
- conflict (153)
- conflict (155)
- conflict (157)
- conflict (188)
Domains in SCOPe 2.08: d3zujf_ - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3zujA (A:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiyeirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieikshdkdysnvnlhehaeahs
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3zujB (B:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiyeirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieikshdkdysnvnlhehaeahs
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3zujC (C:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiyeirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieikshdkdysnvnlhehaeahs
Sequence, based on observed residues (ATOM records): (download)
>3zujC (C:)
vikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmafc
ygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiyeirfdg
vnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakkv
vqlpdyhsvdhhieikshdkdysnvnlhehaeahs
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3zujD (D:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiyeirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieikshdkdysnvnlhehaeahs
Sequence, based on observed residues (ATOM records): (download)
>3zujD (D:)
ikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmafcy
gnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiyeirfdgv
nfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakkvv
qlpdyhsvdhhieikshdkdysnvnlhehaeahs
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3zujE (E:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiyeirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieikshdkdysnvnlhehaeahs
- Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)
>3zujF (F:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiyeirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieikshdkdysnvnlhehaeahs