PDB entry 3zts

View 3zts on RCSB PDB site
Description: Hexagonal form P6122 of the Aquifex aeolicus nucleoside diphosphate kinase (FINAL STAGE OF RADIATION DAMAGE)
Class: transferase
Keywords: transferase, disulfide bridge
Deposited on 2011-07-12, released 2012-03-14
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-05-23, with a file datestamp of 2012-05-18.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.1937
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsa_
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsb_
  • Chain 'C':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsc_
  • Chain 'D':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsd_
  • Chain 'E':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztse_
  • Chain 'F':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsf_
  • Chain 'G':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsg_
  • Chain 'H':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsh_
  • Chain 'I':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsi_
  • Chain 'J':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsj_
  • Chain 'K':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsk_
  • Chain 'L':
    Compound: Nucleoside diphosphate kinase
    Species: Aquifex aeolicus [TaxId:63363]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ztsl_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3ztsA (A:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsA (A:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3ztsB (B:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsB (B:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3ztsC (C:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsC (C:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3ztsD (D:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsD (D:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3ztsE (E:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsE (E:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3ztsF (F:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsF (F:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3ztsG (G:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsG (G:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3ztsH (H:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsH (H:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >3ztsI (I:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsI (I:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >3ztsJ (J:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsJ (J:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >3ztsK (K:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsK (K:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >3ztsL (L:)
    mavertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpff
    qelvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaih
    asdspesaqyeicfifsgleiv
    

    Sequence, based on observed residues (ATOM records): (download)
    >3ztsL (L:)
    avertliivkpdamekgalgkildrfiqegfqikalkmfrftpekagefyyvhrerpffq
    elvefmssgpvvaavlegedaikrvreiigptdseearkvapnsiraqfgtdkgknaiha
    sdspesaqyeicfifsgleiv