PDB entry 3znj

View 3znj on RCSB PDB site
Description: Crystal structure of unliganded ClcF from R.opacus 1CP in crystal form 1.
Class: lyase
Keywords: lyase, ferredoxin fold, dehalogenation, 3-chlorocatechol pathway
Deposited on 2013-02-14, released 2013-03-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-04-24, with a file datestamp of 2013-04-19.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.1644
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

• Chain '1':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znj1_
• Chain '2':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-End)
  Domains in SCOPe 2.06: d3znj2_
• Chain '3':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znj3_
• Chain '4':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znj4_
• Chain '5':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-End)
  Domains in SCOPe 2.06: d3znj5_
• Chain '6':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znj6_
• Chain '7':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-End)
  Domains in SCOPe 2.06: d3znj7_
• Chain '8':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znj8_
• Chain '9':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-End)
  Domains in SCOPe 2.06: d3znj9_
• Chain 'A':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znja_
• Chain 'B':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjb_
• Chain 'C':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjc_
• Chain 'D':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjd_
• Chain 'E':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znje_
• Chain 'F':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjf_
• Chain 'G':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjg_
• Chain 'H':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjh_
• Chain 'I':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znji_
• Chain 'J':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjj_
• Chain 'K':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjk_
• Chain 'L':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjl_
• Chain 'M':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjm_
• Chain 'N':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjn_
• Chain 'O':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjo_
• Chain 'P':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjp_
• Chain 'R':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjr_
• Chain 'S':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjs_
• Chain 'T':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjt_
• Chain 'U':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znju_
• Chain 'V':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjv_
• Chain 'W':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjw_
• Chain 'X':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjx_
• Chain 'Y':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-End)
  Domains in SCOPe 2.06: d3znjy_
• Chain 'Z':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
  Domains in SCOPe 2.06: d3znjz_
• Chain 'a':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
• Chain 'b':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
• Chain 'c':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
• Chain 'd':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
• Chain 'e':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-End)
• Chain 'f':
  Compound: 5-chloromuconolactone dehalogenase
  Species: RHODOCOCCUS OPACUS [TaxId:37919]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8G9L0 (0-93)
• Heterogens: CL, EDO, HOH

PDB Chain Sequences:

• Chain '1':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znj1 (1:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain '2':
  Sequence, based on SEQRES records: (download)
  

  >3znj2 (2:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3znj2 (2:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgk
  

  
  
• Chain '3':
  Sequence, based on SEQRES records: (download)
  

  >3znj3 (3:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3znj3 (3:)
  mlylvrmtvnlprnpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvnshd
  elheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain '4':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znj4 (4:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain '5':
  Sequence, based on SEQRES records: (download)
  

  >3znj5 (5:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3znj5 (5:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvg
  

  
  
• Chain '6':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znj6 (6:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain '7':
  Sequence, based on SEQRES records: (download)
  

  >3znj7 (7:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3znj7 (7:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvg
  

  
  
• Chain '8':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znj8 (8:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain '9':
  Sequence, based on SEQRES records: (download)
  

  >3znj9 (9:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3znj9 (9:)
  mlylvrmtvnlpldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvnshd
  elheilwslpffpyltidveplshhparvgk
  

  
  
• Chain 'A':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjA (A:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjB (B:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'C':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjC (C:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjD (D:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjE (E:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'F':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjF (F:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'G':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjG (G:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'H':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjH (H:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'I':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjI (I:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'J':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjJ (J:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'K':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjK (K:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'L':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjL (L:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'M':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjM (M:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'N':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjN (N:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'O':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjO (O:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'P':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjP (P:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'R':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjR (R:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'S':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjS (S:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'T':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjT (T:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'U':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjU (U:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'V':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjV (V:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'W':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjW (W:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'X':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjX (X:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'Y':
  Sequence, based on SEQRES records: (download)
  

  >3znjY (Y:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3znjY (Y:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparv
  

  
  
• Chain 'Z':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3znjZ (Z:)
  mlylvrmtvnlprnldpreeerlkasekarsrtlqeqgqwrylwrttgkygnisvfdvns
  hdelheilwslpffpyltidveplshhparvgkd
  

  
  
• Chain 'a':
  No sequence available.
  
  
• Chain 'b':
  No sequence available.
  
  
• Chain 'c':
  No sequence available.
  
  
• Chain 'd':
  No sequence available.
  
  
• Chain 'e':
  No sequence available.
  
  
• Chain 'f':
  No sequence available.