PDB entry 3zfx

View 3zfx on RCSB PDB site
Description: Crystal structure of EphB1
Class: transferase
Keywords: transferase
Deposited on 2012-12-12, released 2014-01-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-05-07, with a file datestamp of 2014-05-02.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.18982
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ephrin type-B receptor 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3zfxa_
  • Chain 'B':
    Compound: Ephrin type-B receptor 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3zfxb_
  • Chain 'C':
    Compound: Ephrin type-B receptor 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3zfxc_
  • Chain 'D':
    Compound: Ephrin type-B receptor 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3zfxd_
  • Chain 'E':
    Compound: Ephrin type-B receptor 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3zfxe_
  • Chain 'F':
    Compound: Ephrin type-B receptor 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3zfxf_
  • Chain 'G':
    Compound: Ephrin type-B receptor 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3zfxg_
  • Chain 'H':
    Compound: Ephrin type-B receptor 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3zfxh_
  • Chain 'I':
    Compound: Ephrin type-B receptor 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3zfxi_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3zfxA (A:)
gssdpneavrefakeidvsfvkieevigagefgevykgrlklpgkreiyvaiktlkagys
ekqrrdflseasimgqfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftv
iqlvgmlrgiaagmkylaemnyvhrdlaarnilvnsnlvckvsdfglsrylqddtsdpty
tsslggkipvrwtapeaiayrkftsasdvwsygivmwevmsfgerpywdmsnqdvinaie
qdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntldkmirnpaslktvatita

    Sequence, based on observed residues (ATOM records): (download) 
    >3zfxA (A:)
akeidvsfvkieevigafgevykgrlklpgkreiyvaiktlkagsekqrrdflseasimg
qfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftviqlvgmlrgiaagmk
ylaemnyvhrdlaarnilvnsnlvckvsdfglsrylqgkipvrwtapeaiayrkftsasd
vwsygivmwevmsfgerpywdmsnqdvinaieqdyrlpppmdcpaalhqlmldcwqkdrn
srprfaeivntldkmirnpaslktvat

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3zfxB (B:)
gssdpneavrefakeidvsfvkieevigagefgevykgrlklpgkreiyvaiktlkagys
ekqrrdflseasimgqfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftv
iqlvgmlrgiaagmkylaemnyvhrdlaarnilvnsnlvckvsdfglsrylqddtsdpty
tsslggkipvrwtapeaiayrkftsasdvwsygivmwevmsfgerpywdmsnqdvinaie
qdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntldkmirnpaslktvatita

    Sequence, based on observed residues (ATOM records): (download) 
    >3zfxB (B:)
akeidvsfvkieevigagevykgrlkreiyvaiktlksekqrrdflseasimgqfdhpni
irlegvvtksrpvmiitefmengaldsflrqndgqftviqlvgmlrgiaagmkylaemny
vhrdlaarnilvnsnlvckvsdfglsrylvrwtapeaiayrkftsasdvwsygivmwevm
sfgerpywdmsnqdvinaieqdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntl
dkmirnpaslktva

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3zfxC (C:)
gssdpneavrefakeidvsfvkieevigagefgevykgrlklpgkreiyvaiktlkagys
ekqrrdflseasimgqfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftv
iqlvgmlrgiaagmkylaemnyvhrdlaarnilvnsnlvckvsdfglsrylqddtsdpty
tsslggkipvrwtapeaiayrkftsasdvwsygivmwevmsfgerpywdmsnqdvinaie
qdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntldkmirnpaslktvatita

    Sequence, based on observed residues (ATOM records): (download) 
    >3zfxC (C:)
idvsfvkieevigagevykgrreiyvaiktlksekqrrdflseasimgqfdhpniirleg
vvtksrpvmiitefmengaldsflrqndgqftviqlvgmlrgiaagmkylaemnyvhrdl
aarnilvnsnlvckvsdfglsrpvrwtapeaiayrkftsasdvwsygivmwevmsfgerp
ywdmsnqdvinaieqdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntldkmirn
paslktva

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3zfxD (D:)
gssdpneavrefakeidvsfvkieevigagefgevykgrlklpgkreiyvaiktlkagys
ekqrrdflseasimgqfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftv
iqlvgmlrgiaagmkylaemnyvhrdlaarnilvnsnlvckvsdfglsrylqddtsdpty
tsslggkipvrwtapeaiayrkftsasdvwsygivmwevmsfgerpywdmsnqdvinaie
qdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntldkmirnpaslktvatita

    Sequence, based on observed residues (ATOM records): (download) 
    >3zfxD (D:)
akeidvsfvkieevigafgevykgrlklkreiyvaiktlkagsekqrrdflseasimgqf
dhpniirlegvvtksrpvmiitefmengaldsflrqndgqftviqlvgmlrgiaagmkyl
aemnyvhrdlaarnilvnsnlvckvsdfglsrylqgkipvrwtapeaiayrkftsasdvw
sygivmwevmsfgerpywdmsnqdvinaieqdyrlpppmdcpaalhqlmldcwqkdrnsr
prfaeivntldkmirnpaslktvat

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3zfxE (E:)
gssdpneavrefakeidvsfvkieevigagefgevykgrlklpgkreiyvaiktlkagys
ekqrrdflseasimgqfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftv
iqlvgmlrgiaagmkylaemnyvhrdlaarnilvnsnlvckvsdfglsrylqddtsdpty
tsslggkipvrwtapeaiayrkftsasdvwsygivmwevmsfgerpywdmsnqdvinaie
qdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntldkmirnpaslktvatita

    Sequence, based on observed residues (ATOM records): (download) 
    >3zfxE (E:)
akeidvsfvkieevigagevykgrlklkreiyvaiktlkasekqrrdflseasimgqfdh
pniirlegvvtksrpvmiitefmengaldsflrqndgqftviqlvgmlrgiaagmkylae
mnyvhrdlaarnilvnsnlvckvsdfglsrylgkipvrwtapeaiayrkftsasdvwsyg
ivmwevmsfgerpywdmsnqdvinaieqdyrlpppmdcpaalhqlmldcwqkdrnsrprf
aeivntldkmirnpaslktvat

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3zfxF (F:)
gssdpneavrefakeidvsfvkieevigagefgevykgrlklpgkreiyvaiktlkagys
ekqrrdflseasimgqfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftv
iqlvgmlrgiaagmkylaemnyvhrdlaarnilvnsnlvckvsdfglsrylqddtsdpty
tsslggkipvrwtapeaiayrkftsasdvwsygivmwevmsfgerpywdmsnqdvinaie
qdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntldkmirnpaslktvatita

    Sequence, based on observed residues (ATOM records): (download) 
    >3zfxF (F:)
keidvsfvkieevigagevykgrlkeiyvaiktlkasekqrrdflseasimgqfdhpnii
rlegvvtksrpvmiitefmengaldsflrqndgqftviqlvgmlrgiaagmkylaemnyv
hrdlaarnilvnsnlvckvsdfglsrylvrwtapeaiayrkftsasdvwsygivmwevms
fgerpywdmsnqdvinaieqdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntld
kmirnpaslktvat

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3zfxG (G:)
gssdpneavrefakeidvsfvkieevigagefgevykgrlklpgkreiyvaiktlkagys
ekqrrdflseasimgqfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftv
iqlvgmlrgiaagmkylaemnyvhrdlaarnilvnsnlvckvsdfglsrylqddtsdpty
tsslggkipvrwtapeaiayrkftsasdvwsygivmwevmsfgerpywdmsnqdvinaie
qdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntldkmirnpaslktvatita

    Sequence, based on observed residues (ATOM records): (download) 
    >3zfxG (G:)
akeidvsfvkieevigagevykgrlkeiyvaiktlksekqrrdflseasimgqfdhpnii
rlegvvtksrpvmiitefmengaldsflrqndgqftviqlvgmlrgiaagmkylaemnyv
hrdlaarnilvnsnlvckvsdfglsrylvrwtapeaiayrkftsasdvwsygivmwevms
fgerpywdmsnqdvinaieqdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntld
kmirnpaslktva

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3zfxH (H:)
gssdpneavrefakeidvsfvkieevigagefgevykgrlklpgkreiyvaiktlkagys
ekqrrdflseasimgqfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftv
iqlvgmlrgiaagmkylaemnyvhrdlaarnilvnsnlvckvsdfglsrylqddtsdpty
tsslggkipvrwtapeaiayrkftsasdvwsygivmwevmsfgerpywdmsnqdvinaie
qdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntldkmirnpaslktvatita

    Sequence, based on observed residues (ATOM records): (download) 
    >3zfxH (H:)
akeidvsfvkieevigaefgevykgrlklpgkreiyvaiktlkagsekqrrdflseasim
gqfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftviqlvgmlrgiaagm
kylaemnyvhrdlaarnilvnsnlvckvsdfglsrylgkipvrwtapeaiayrkftsasd
vwsygivmwevmsfgerpywdmsnqdvinaieqdyrlpppmdcpaalhqlmldcwqkdrn
srprfaeivntldkmirnpaslktva

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3zfxI (I:)
gssdpneavrefakeidvsfvkieevigagefgevykgrlklpgkreiyvaiktlkagys
ekqrrdflseasimgqfdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftv
iqlvgmlrgiaagmkylaemnyvhrdlaarnilvnsnlvckvsdfglsrylqddtsdpty
tsslggkipvrwtapeaiayrkftsasdvwsygivmwevmsfgerpywdmsnqdvinaie
qdyrlpppmdcpaalhqlmldcwqkdrnsrprfaeivntldkmirnpaslktvatita

    Sequence, based on observed residues (ATOM records): (download) 
    >3zfxI (I:)
akeidvsfvkieevigaefgevykgrlklpgkreiyvaiktlksekqrrdflseasimgq
fdhpniirlegvvtksrpvmiitefmengaldsflrqndgqftviqlvgmlrgiaagmky
laemnyvhrdlaarnilvnsnlvckvsdfglsrylgkipvrwtapeaiayrkftsasdvw
sygivmwevmsfgerpywdmsnqdvinaieqdyrlpppmdcpaalhqlmldcwqkdrnsr
prfaeivntldkmirnpaslktv