PDB entry 3ze8

View 3ze8 on RCSB PDB site
Description: 3D structure of the Ni-Fe-Se hydrogenase from D. vulgaris Hildenborough in the reduced state at 1.95 Angstroms
Class: oxidoreductase
Keywords: oxidoreductase, hydrogenase biohydrogen oxygen tolerance
Deposited on 2012-12-03, released 2013-06-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-06-03, with a file datestamp of 2020-05-29.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: periplasmic [nifese] hydrogenase, small subunit
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ze8a_
  • Chain 'B':
    Compound: periplasmic [nifese] hydrogenase, large subunit, selenocysteine-containing
    Species: DESULFOVIBRIO VULGARIS [TaxId:882]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72AS3 (Start-483)
      • microheterogeneity (477)
    Domains in SCOPe 2.08: d3ze8b_
  • Heterogens: SF4, C15, FCO, NI, FE2, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ze8A (A:)
gtltgerppvfwlqgqgctgcsvtllnsvhpsiadvllkvislefhptvmawegehaieh
mrkvaekfkgkfflviegsvpveadgkyciigeanhheismvdalkefgpnaaavlavgt
caayggipaaegsetgatavskflgdngiktpvvnipgcpphpdwivgtvvlaldaikkn
glegglaevvkvldsdgrptpffgrnihencpyldkydegvmsatftdkvgcrydlgckg
pmtmadcferkwnggvnwcvqnavcigcvepdfpdgkspfyqa

    Sequence, based on observed residues (ATOM records): (download) 
    >3ze8A (A:)
rppvfwlqgqgctgcsvtllnsvhpsiadvllkvislefhptvmawegehaiehmrkvae
kfkgkfflviegsvpveadgkyciigeanhheismvdalkefgpnaaavlavgtcaaygg
ipaaegsetgatavskflgdngiktpvvnipgcpphpdwivgtvvlaldaikkngleggl
aevvkvldsdgrptpffgrnihencpyldkydegvmsatftdkvgcrydlgckgpmtmad
cferkwnggvnwcvqnavcigcvepdfpdgkspfyqa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ze8B (B:)
gatgrttiaidpvtrieghlkaevvvengkvvdarlsggmyrgfetilrgrdprdasqiv
qricgvcptahstasvlaldeafgakvpnngritrnlifganylqshilhfyhlsaqdfv
qgpdtapfvprfpksdlrlskelnkagvdqyiealevrrichemvalfggrmphvqgqvv
ggateiptkeklveyaarfkkvrdfveqkyvpvvytigskykdmfkvgqgfkaalcvgaf
pldnsgkkhlfmpgvyakgkdmpfdpskikeyvkyswfaeettglnykegktipapdkag
aysfvkaprydglslevgplarmwvnnpelspvgkkllkdlfgisakkfrdlgeeaafsl
mgrhvaraeetyymlgaiegwlkeikagedtvvmpavpasaegtgfteaprgsllhyvkv
kdskidnyqivsaslwncnprddmgqrgaveealigipvddiqnpvnvarlirafdpxlg
cavh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ze8B (B:)
grttiaidpvtrieghlkaevvvengkvvdarlsggmyrgfetilrgrdprdasqivqri
cgvcptahstasvlaldeafgakvpnngritrnlifganylqshilhfyhlsaqdfvqgp
dtapfvprfpksdlrlskelnkagvdqyiealevrrichemvalfggrmphvqgqvvgga
teiptkeklveyaarfkkvrdfveqkyvpvvytigskykdmfkvgqgfkaalcvgafpld
nsgkkhlfmpgvyakgkdmpfdpskikeyvkyswfaeettglnykegktipapdkagays
fvkaprydglslevgplarmwvnnpelspvgkkllkdlfgisakkfrdlgeeaafslmgr
hvaraeetyymlgaiegwlkeikagedtvvmpavpasaegtgfteaprgsllhyvkvkds
kidnyqivsaslwncnprddmgqrgaveealigipvddiqnpvnvarlirafdpxlgcav
h