PDB entry 3zdv

View 3zdv on RCSB PDB site
Description: Crystal structure of the LecB lectin from Pseudomonas aeruginosa in complex with Methyl 6-(2,4,6-trimethylphenylsulfonylamido)-6-deoxy-alpha-D-mannopyranoside
Class: sugar binding protein
Keywords: sugar binding protein, glycomimetic, inhibitor
Deposited on 2012-11-30, released 2013-09-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.41 Å
R-factor: N/A
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Fucose-binding lectin PA-IIL
    Species: PSEUDOMONAS AERUGINOSA [TaxId:208964]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3zdva_
  • Chain 'B':
    Compound: Fucose-binding lectin PA-IIL
    Species: PSEUDOMONAS AERUGINOSA [TaxId:208964]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3zdvb_
  • Chain 'C':
    Compound: Fucose-binding lectin PA-IIL
    Species: PSEUDOMONAS AERUGINOSA [TaxId:208964]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3zdvc_
  • Chain 'D':
    Compound: Fucose-binding lectin PA-IIL
    Species: PSEUDOMONAS AERUGINOSA [TaxId:208964]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3zdvd_
  • Heterogens: CA, MMA, F1A, GOL, EDO, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3zdvA (A:)
matqgvftlpantrfgvtafanssgtqtvnvlvnnetaatfsgqstnnavigtqvlnsgs
sgkvqvqvsvngrpsdlvsaqviltnelnfalvgsedgtdndyndavvvinwplg

    Sequence, based on observed residues (ATOM records): (download) 
    >3zdvA (A:)
atqgvftlpantrfgvtafanssgtqtvnvlvnnetaatfsgqstnnavigtqvlnsgss
gkvqvqvsvngrpsdlvsaqviltnelnfalvgsedgtdndyndavvvinwplg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3zdvB (B:)
matqgvftlpantrfgvtafanssgtqtvnvlvnnetaatfsgqstnnavigtqvlnsgs
sgkvqvqvsvngrpsdlvsaqviltnelnfalvgsedgtdndyndavvvinwplg

    Sequence, based on observed residues (ATOM records): (download) 
    >3zdvB (B:)
atqgvftlpantrfgvtafanssgtqtvnvlvnnetaatfsgqstnnavigtqvlnsgss
gkvqvqvsvngrpsdlvsaqviltnelnfalvgsedgtdndyndavvvinwplg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3zdvC (C:)
matqgvftlpantrfgvtafanssgtqtvnvlvnnetaatfsgqstnnavigtqvlnsgs
sgkvqvqvsvngrpsdlvsaqviltnelnfalvgsedgtdndyndavvvinwplg

    Sequence, based on observed residues (ATOM records): (download) 
    >3zdvC (C:)
atqgvftlpantrfgvtafanssgtqtvnvlvnnetaatfsgqstnnavigtqvlnsgss
gkvqvqvsvngrpsdlvsaqviltnelnfalvgsedgtdndyndavvvinwplg

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3zdvD (D:)
matqgvftlpantrfgvtafanssgtqtvnvlvnnetaatfsgqstnnavigtqvlnsgs
sgkvqvqvsvngrpsdlvsaqviltnelnfalvgsedgtdndyndavvvinwplg

    Sequence, based on observed residues (ATOM records): (download) 
    >3zdvD (D:)
atqgvftlpantrfgvtafanssgtqtvnvlvnnetaatfsgqstnnavigtqvlnsgss
gkvqvqvsvngrpsdlvsaqviltnelnfalvgsedgtdndyndavvvinwplg