PDB entry 3wsd

View 3wsd on RCSB PDB site
Description: Oxidized HcgD from Methanocaldococcus jannaschii
Class: metal binding protein
Keywords: NIF3-related protein, Metal binding protein
Deposited on 2014-03-13, released 2014-08-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-08-27, with a file datestamp of 2014-08-22.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.176
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative GTP cyclohydrolase 1 type 2
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Gene: MJ0927
    Database cross-references and differences (RAF-indexed):
    • PDB 3WSD (Start-251)
    Domains in SCOPe 2.08: d3wsda_
  • Chain 'B':
    Compound: Putative GTP cyclohydrolase 1 type 2
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Gene: MJ0927
    Database cross-references and differences (RAF-indexed):
    • PDB 3WSD (Start-251)
    Domains in SCOPe 2.08: d3wsdb_
  • Chain 'C':
    Compound: Putative GTP cyclohydrolase 1 type 2
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Gene: MJ0927
    Database cross-references and differences (RAF-indexed):
    • PDB 3WSD (Start-251)
    Domains in SCOPe 2.08: d3wsdc_
  • Chain 'D':
    Compound: Putative GTP cyclohydrolase 1 type 2
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Gene: MJ0927
    Database cross-references and differences (RAF-indexed):
    • PDB 3WSD (Start-251)
    Domains in SCOPe 2.08: d3wsdd_
  • Chain 'E':
    Compound: Putative GTP cyclohydrolase 1 type 2
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Gene: MJ0927
    Database cross-references and differences (RAF-indexed):
    • PDB 3WSD (Start-251)
    Domains in SCOPe 2.08: d3wsde_
  • Chain 'F':
    Compound: Putative GTP cyclohydrolase 1 type 2
    Species: METHANOCALDOCOCCUS JANNASCHII [TaxId:243232]
    Gene: MJ0927
    Database cross-references and differences (RAF-indexed):
    • PDB 3WSD (Start-251)
    Domains in SCOPe 2.08: d3wsdf_
  • Heterogens: FE, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3wsdA (A:)
gshmevvnmkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvik
kaekegvdflfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndal
aelynlenpkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavls
gyglsqssikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkefls
snldleiisldf

    Sequence, based on observed residues (ATOM records): (download) 
    >3wsdA (A:)
vvnmkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvikkaeke
gvdflfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndalaelyn
lenpkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavlsgygls
qssikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkeflssnldl
eiisldf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3wsdB (B:)
gshmevvnmkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvik
kaekegvdflfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndal
aelynlenpkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavls
gyglsqssikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkefls
snldleiisldf

    Sequence, based on observed residues (ATOM records): (download) 
    >3wsdB (B:)
mkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvikkaekegvd
flfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndalaelynlen
pkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavlsgyglsqss
ikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkeflssnldleii
sldf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3wsdC (C:)
gshmevvnmkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvik
kaekegvdflfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndal
aelynlenpkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavls
gyglsqssikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkefls
snldleiisldf

    Sequence, based on observed residues (ATOM records): (download) 
    >3wsdC (C:)
mkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvikkaekegvd
flfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndalaelynlen
pkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavlsgyglsqss
ikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkeflssnldleii
sldf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3wsdD (D:)
gshmevvnmkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvik
kaekegvdflfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndal
aelynlenpkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavls
gyglsqssikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkefls
snldleiisldf

    Sequence, based on observed residues (ATOM records): (download) 
    >3wsdD (D:)
vvnmkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvikkaeke
gvdflfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndalaelyn
lenpkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavlsgygls
qssikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkeflssnldl
eiisldf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3wsdE (E:)
gshmevvnmkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvik
kaekegvdflfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndal
aelynlenpkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavls
gyglsqssikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkefls
snldleiisldf

    Sequence, based on observed residues (ATOM records): (download) 
    >3wsdE (E:)
mkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvikkaekegvd
flfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndalaelynlen
pkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavlsgyglsqss
ikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkeflssnldleii
sldf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3wsdF (F:)
gshmevvnmkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvik
kaekegvdflfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndal
aelynlenpkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavls
gyglsqssikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkefls
snldleiisldf

    Sequence, based on observed residues (ATOM records): (download) 
    >3wsdF (F:)
mkakeiiefietfapkdlaiegdniglqvgdnldkeikklgialdpslsvikkaekegvd
flfthhpllkdpirnftgviykklkilmendiilysahtnldicknglndalaelynlen
pkplydnglgrvgifkgsfeefleitkkyihknpivvkskevddnfklavlsgyglsqss
ikyvaekadvylsgdlthhskilaeelglvvvdathystevfglkkfkeflssnldleii
sldf