PDB entry 3wkm

View 3wkm on RCSB PDB site
Description: The periplasmic PDZ tandem fragment of the RseP homologue from Aquifex aeolicus in complex with the Fab fragment
Class: hydrolase
Keywords: pdz domain, hydrolase
Deposited on 2013-10-28, released 2013-12-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-02-19, with a file datestamp of 2014-02-14.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.227
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative zinc metalloprotease aq_1964
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: aq_1964
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Putative zinc metalloprotease aq_1964
    Species: Aquifex aeolicus [TaxId:224324]
    Gene: aq_1964
    Database cross-references and differences (RAF-indexed):
    • Uniprot O67776 (2-End)
      • expression tag (0-1)
  • Chain 'H':
    Compound: mouse igg1-kappa fab (heavy chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3WKM (0-End)
    Domains in SCOPe 2.08: d3wkmh_
  • Chain 'I':
    Compound: mouse igg1-kappa fab (heavy chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3WKM (0-End)
    Domains in SCOPe 2.08: d3wkmi_
  • Chain 'L':
    Compound: mouse igg1-kappa fab (light chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3WKM (0-End)
    Domains in SCOPe 2.08: d3wkml1, d3wkml2
  • Chain 'M':
    Compound: mouse igg1-kappa fab (light chain)
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 3WKM (0-End)
    Domains in SCOPe 2.08: d3wkmm1, d3wkmm2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3wkmH (H:)
evqlqqsgaelvkpgasvklsctasgfnikdtylhwvkqrpehglewigridpangnaky
dpkfqdkatitadtssntaylqlnsltsedtavyycsnrqlglrgyyyamdywgqgtsvs
vssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavl
qsdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdc

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkmH (H:)
evqlqqsgaelvkpgasvklsctasgfnikdtylhwvkqrpehglewigridpangnaky
dpkfqdkatitadtssntaylqlnsltsedtavyycsnrqlglrgyyyamdywgqgtsvs
vssakttppsvyplapgsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlyt
lsssvtvpsstwpsetvtcnvahpasstkvdkkivp

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3wkmI (I:)
evqlqqsgaelvkpgasvklsctasgfnikdtylhwvkqrpehglewigridpangnaky
dpkfqdkatitadtssntaylqlnsltsedtavyycsnrqlglrgyyyamdywgqgtsvs
vssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavl
qsdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdc

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkmI (I:)
evqlqqsgaelvkpgasvklsctasgfnikdtylhwvkqrpehglewigridpangnaky
dpkfqdkatitadtssntaylqlnsltsedtavyycsnrqlglrgyyyamdywgqgtsvs
vssakttppsvyplalgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdlytlsssvt
cnvahpasstkvdk

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >3wkmL (L:)
yivltqspvslavslgqratiscrasesvdsygdsfmhwyqqkpgqppklliylasnles
gvparfsgsgsrtdftltidpveaddaatyycqqnnedpwtfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkmL (L:)
yivltqspvslavslgqratiscrasesvdsygdsfmhwyqqkpgqppklliylasnles
gvparfsgsgsrtdftltidpveaddaatyycqqnnedpwtfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnr

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >3wkmM (M:)
yivltqspvslavslgqratiscrasesvdsygdsfmhwyqqkpgqppklliylasnles
gvparfsgsgsrtdftltidpveaddaatyycqqnnedpwtfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrnec

    Sequence, based on observed residues (ATOM records): (download) 
    >3wkmM (M:)
yivltqspvslavslgqratiscrasesvdsygdsfmhwyqqkpgqppklliylasnles
gvparfsgsgsrtdftltidpveaddaatyycqqnnedpwtfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfn