PDB entry 3wdp

View 3wdp on RCSB PDB site
Description: Structural analysis of a beta-glucosidase mutant derived from a hyperthermophilic tetrameric structure
Class: hydrolase
Keywords: tim barrel, hydrolase, sugar binding, hydrolysis
Deposited on 2013-06-19, released 2014-03-12
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-03-12, with a file datestamp of 2014-03-07.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.213
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'P':
    Compound: Beta-glucosidase
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: CELB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q51723 (2-472)
      • expression tag (1)
      • engineered mutation (170)
      • engineered mutation (220)
      • engineered mutation (227)
    Domains in SCOPe 2.06: d3wdpp1, d3wdpp2
  • Chain 'Q':
    Compound: Beta-glucosidase
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: CELB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q51723 (2-472)
      • expression tag (1)
      • engineered mutation (170)
      • engineered mutation (220)
      • engineered mutation (227)
    Domains in SCOPe 2.06: d3wdpq1, d3wdpq2
  • Chain 'R':
    Compound: Beta-glucosidase
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: CELB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q51723 (2-472)
      • expression tag (1)
      • engineered mutation (170)
      • engineered mutation (220)
      • engineered mutation (227)
    Domains in SCOPe 2.06: d3wdpr1, d3wdpr2
  • Chain 'S':
    Compound: Beta-glucosidase
    Species: Pyrococcus furiosus [TaxId:2261]
    Gene: CELB
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q51723 (2-472)
      • expression tag (1)
      • engineered mutation (170)
      • engineered mutation (220)
      • engineered mutation (227)
    Domains in SCOPe 2.06: d3wdps1, d3wdps2
  • Heterogens: GOL, PO4, HOH

PDB Chain Sequences:

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >3wdpP (P:)
makfpknfmfgyswsgfqfemglpgsevesdwwvwvhdkeniasglvsgdlpengpaywh
lykqdhdiaeklgmdcirggiewarifpkptfdvkvdvekdeegniisvdvpestikele
kianmealehyrkiysdwkergktfilnlyhwplplwihdpiavrklgpdaapagwldek
tvvefvkfaafvayhlddlvdmwstmnepnvvynqgyinlasgfppgflsfeaaekakfn
liqahigaydaikeyseksvgviyafawhdplaeeykdeveeirkkdyefvtilhskgkl
dwigvnyysrlvygakdghlvplpgygfmserggfaksgrpasdfgwemypeglenllky
lnnayelpmiitengmadaadryrphylvshlkavynamkegadvrgylhwsltdnyewa
qgfrmrfglvyvdfetkkrylrpsalvfreiatqkeipeelahladlkfvtrk

    Sequence, based on observed residues (ATOM records): (download) 
    >3wdpP (P:)
akfpknfmfgyswsgfqfemglpgsevesdwwvwvhdkeniasglvsgdlpengpaywhl
ykqdhdiaeklgmdcirggiewarifpkptfdvkvdvekdeegniisvdvpestikelek
ianmealehyrkiysdwkergktfilnlyhwplplwihdpiavrklgpdaapagwldekt
vvefvkfaafvayhlddlvdmwstmnepnvvynqgyinlasgfppgflsfeaaekakfnl
iqahigaydaikeyseksvgviyafawhdplaeeykdeveeirkkdyefvtilhskgkld
wigvnyysrlvygakdghlvplpgygfmserggfaksgrpasdfgwemypeglenllkyl
nnayelpmiitengmadaadryrphylvshlkavynamkegadvrgylhwsltdnyewaq
gfrmrfglvyvdfetkkrylrpsalvfreiatqkeipeelahladlkfvtrk

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >3wdpQ (Q:)
makfpknfmfgyswsgfqfemglpgsevesdwwvwvhdkeniasglvsgdlpengpaywh
lykqdhdiaeklgmdcirggiewarifpkptfdvkvdvekdeegniisvdvpestikele
kianmealehyrkiysdwkergktfilnlyhwplplwihdpiavrklgpdaapagwldek
tvvefvkfaafvayhlddlvdmwstmnepnvvynqgyinlasgfppgflsfeaaekakfn
liqahigaydaikeyseksvgviyafawhdplaeeykdeveeirkkdyefvtilhskgkl
dwigvnyysrlvygakdghlvplpgygfmserggfaksgrpasdfgwemypeglenllky
lnnayelpmiitengmadaadryrphylvshlkavynamkegadvrgylhwsltdnyewa
qgfrmrfglvyvdfetkkrylrpsalvfreiatqkeipeelahladlkfvtrk

    Sequence, based on observed residues (ATOM records): (download) 
    >3wdpQ (Q:)
akfpknfmfgyswsgfqfemglpgsevesdwwvwvhdkeniasglvsgdlpengpaywhl
ykqdhdiaeklgmdcirggiewarifpkptfdvkvdvekdeegniisvdvpestikelek
ianmealehyrkiysdwkergktfilnlyhwplplwihdpiavrklgpdaapagwldekt
vvefvkfaafvayhlddlvdmwstmnepnvvynqgyinlasgfppgflsfeaaekakfnl
iqahigaydaikeyseksvgviyafawhdplaeeykdeveeirkkdyefvtilhskgkld
wigvnyysrlvygakdghlvplpgygfmserggfaksgrpasdfgwemypeglenllkyl
nnayelpmiitengmadaadryrphylvshlkavynamkegadvrgylhwsltdnyewaq
gfrmrfglvyvdfetkkrylrpsalvfreiatqkeipeelahladlkfvtrk

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >3wdpR (R:)
makfpknfmfgyswsgfqfemglpgsevesdwwvwvhdkeniasglvsgdlpengpaywh
lykqdhdiaeklgmdcirggiewarifpkptfdvkvdvekdeegniisvdvpestikele
kianmealehyrkiysdwkergktfilnlyhwplplwihdpiavrklgpdaapagwldek
tvvefvkfaafvayhlddlvdmwstmnepnvvynqgyinlasgfppgflsfeaaekakfn
liqahigaydaikeyseksvgviyafawhdplaeeykdeveeirkkdyefvtilhskgkl
dwigvnyysrlvygakdghlvplpgygfmserggfaksgrpasdfgwemypeglenllky
lnnayelpmiitengmadaadryrphylvshlkavynamkegadvrgylhwsltdnyewa
qgfrmrfglvyvdfetkkrylrpsalvfreiatqkeipeelahladlkfvtrk

    Sequence, based on observed residues (ATOM records): (download) 
    >3wdpR (R:)
akfpknfmfgyswsgfqfemglpgsevesdwwvwvhdkeniasglvsgdlpengpaywhl
ykqdhdiaeklgmdcirggiewarifpkptfdvkvdvekdeegniisvdvpestikelek
ianmealehyrkiysdwkergktfilnlyhwplplwihdpiavrklgpdaapagwldekt
vvefvkfaafvayhlddlvdmwstmnepnvvynqgyinlasgfppgflsfeaaekakfnl
iqahigaydaikeyseksvgviyafawhdplaeeykdeveeirkkdyefvtilhskgkld
wigvnyysrlvygakdghlvplpgygfmserggfaksgrpasdfgwemypeglenllkyl
nnayelpmiitengmadaadryrphylvshlkavynamkegadvrgylhwsltdnyewaq
gfrmrfglvyvdfetkkrylrpsalvfreiatqkeipeelahladlkfvtrk

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >3wdpS (S:)
makfpknfmfgyswsgfqfemglpgsevesdwwvwvhdkeniasglvsgdlpengpaywh
lykqdhdiaeklgmdcirggiewarifpkptfdvkvdvekdeegniisvdvpestikele
kianmealehyrkiysdwkergktfilnlyhwplplwihdpiavrklgpdaapagwldek
tvvefvkfaafvayhlddlvdmwstmnepnvvynqgyinlasgfppgflsfeaaekakfn
liqahigaydaikeyseksvgviyafawhdplaeeykdeveeirkkdyefvtilhskgkl
dwigvnyysrlvygakdghlvplpgygfmserggfaksgrpasdfgwemypeglenllky
lnnayelpmiitengmadaadryrphylvshlkavynamkegadvrgylhwsltdnyewa
qgfrmrfglvyvdfetkkrylrpsalvfreiatqkeipeelahladlkfvtrk

    Sequence, based on observed residues (ATOM records): (download) 
    >3wdpS (S:)
akfpknfmfgyswsgfqfemglpgsevesdwwvwvhdkeniasglvsgdlpengpaywhl
ykqdhdiaeklgmdcirggiewarifpkptfdvkvdvekdeegniisvdvpestikelek
ianmealehyrkiysdwkergktfilnlyhwplplwihdpiavrklgpdaapagwldekt
vvefvkfaafvayhlddlvdmwstmnepnvvynqgyinlasgfppgflsfeaaekakfnl
iqahigaydaikeyseksvgviyafawhdplaeeykdeveeirkkdyefvtilhskgkld
wigvnyysrlvygakdghlvplpgygfmserggfaksgrpasdfgwemypeglenllkyl
nnayelpmiitengmadaadryrphylvshlkavynamkegadvrgylhwsltdnyewaq
gfrmrfglvyvdfetkkrylrpsalvfreiatqkeipeelahladlkfvtrk