PDB entry 3wd5
View 3wd5 on RCSB PDB site
Description: Crystal structure of TNFalpha in complex with Adalimumab Fab fragment
Class: immune system
Keywords: Antibody binding epitope, IMMUNE SYSTEM
Deposited on
2013-06-06, released
2013-08-14
The last revision prior to the SCOPe 2.04 freeze date was dated
2013-08-21, with a file datestamp of
2013-08-16.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.191
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Tumor necrosis factor
Species: Homo sapiens [TaxId:9606]
Gene: TNFA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3wd5a_ - Chain 'H':
Compound: Adalimumab Heavy Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Adalimumab Light Chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3wd5l1, d3wd5l2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3wd5A (A:)
vrsssrtpsdkpvahvvanpqaegqlqwlndranallangvelrdnqlvvpseglyliys
qvlfkgqgcpsthvllthtisriavsyqtkvnllsaikspcqretpegaeakpwyepiyl
ggvfqlekgdrlsaeinrpdyldfaesgqvyfgiial
Sequence, based on observed residues (ATOM records): (download)
>3wd5A (A:)
rtpsdkpvahvvanpqaegqlqwlndranallangvelrdnqlvvpseglyliysqvlfk
gqgcpsthvllthtisriavsyqtkvnllsaikspcqretpegaeakpwyepiylggvfq
lekgdrlsaeinrpdyldfaesgqvyfgiial
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>3wd5L (L:)
diqmtqspsslsasvgdrvtitcrasqgirnylawyqqkpgkapklliyaastlqsgvps
rfsgsgsgtdftltisslqpedvatyycqrynrapytfgqgtkveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrge