PDB entry 3vvd

View 3vvd on RCSB PDB site
Description: Crystal structure of TTC0807 complexed with Ornithine
Class: transport protein
Keywords: Ornithine-complex, Periplasm substrate binding protein, TRANSPORT PROTEIN
Deposited on 2012-07-21, released 2013-06-26
The last revision prior to the SCOPe 2.05 freeze date was dated 2013-09-04, with a file datestamp of 2013-08-30.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.202
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Amino acid ABC transporter, binding protein
    Species: Thermus thermophilus [TaxId:262724]
    Gene: TTC0807, TT_C0807
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72JG5 (24-259)
      • expression tag (19-23)
    Domains in SCOPe 2.05: d3vvda_
  • Chain 'B':
    Compound: Amino acid ABC transporter, binding protein
    Species: Thermus thermophilus [TaxId:262724]
    Gene: TTC0807, TT_C0807
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72JG5 (24-259)
      • expression tag (19-23)
    Domains in SCOPe 2.05: d3vvdb_
  • Heterogens: ORN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3vvdA (A:)
mkhhhhhhhhgglvprgshggsefqvrsfeeikrsgeirigtegafppfnyfdernqltg
fevdlgnaiaerlglkprwiaqsfdtlliqlnqgrfdfviashgiteeraravdftnphy
ctggvivsrkggprtakdlqgkvvgvqvgttymeaaqkipgikevrtyqrdpdalqdlla
gridtwitdrfvakeaikerklentlqvgelvfqervamavakgnkslldalnralaelm
qdgtyarisqkwfgedvrck

    Sequence, based on observed residues (ATOM records): (download) 
    >3vvdA (A:)
ggsefqvrsfeeikrsgeirigtegafppfnyfdernqltgfevdlgnaiaerlglkprw
iaqsfdtlliqlnqgrfdfviashgiteeraravdftnphyctggvivsrkggprtakdl
qgkvvgvqvgttymeaaqkipgikevrtyqrdpdalqdllagridtwitdrfvakeaike
rklentlqvgelvfqervamavakgnkslldalnralaelmqdgtyarisqkwfgedvrc
k

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3vvdB (B:)
mkhhhhhhhhgglvprgshggsefqvrsfeeikrsgeirigtegafppfnyfdernqltg
fevdlgnaiaerlglkprwiaqsfdtlliqlnqgrfdfviashgiteeraravdftnphy
ctggvivsrkggprtakdlqgkvvgvqvgttymeaaqkipgikevrtyqrdpdalqdlla
gridtwitdrfvakeaikerklentlqvgelvfqervamavakgnkslldalnralaelm
qdgtyarisqkwfgedvrck

    Sequence, based on observed residues (ATOM records): (download) 
    >3vvdB (B:)
ggsefqvrsfeeikrsgeirigtegafppfnyfdernqltgfevdlgnaiaerlglkprw
iaqsfdtlliqlnqgrfdfviashgiteeraravdftnphyctggvivsrkggprtakdl
qgkvvgvqvgttymeaaqkipgikevrtyqrdpdalqdllagridtwitdrfvakeaike
rklentlqvgelvfqervamavakgnkslldalnralaelmqdgtyarisqkwfgedvrc
k