PDB entry 3vr4

View 3vr4 on RCSB PDB site
Description: Crystal structure of Enterococcus hirae V1-ATPase [eV1]
Class: hydrolase
Keywords: V-ATPase, Enterococcus hirae, Rotary motor, P-loop, Hydrolase, Na(+)-ATPase, ATP Binding
Deposited on 2012-04-03, released 2013-01-16
The last revision prior to the SCOPe 2.06 freeze date was dated 2013-02-06, with a file datestamp of 2013-02-01.
Experiment type: XRAY
Resolution: 2.17 Å
R-factor: 0.169
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08636 (7-End)
      • expression tag (6)
  • Chain 'B':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q08636 (7-End)
      • expression tag (0-6)
  • Chain 'C':
    Compound: V-type sodium ATPase catalytic subunit A
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: V-type sodium ATPase subunit B
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3vr4d1, d3vr4d2, d3vr4d3
  • Chain 'E':
    Compound: V-type sodium ATPase subunit B
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3vr4e1, d3vr4e2, d3vr4e3
  • Chain 'F':
    Compound: V-type sodium ATPase subunit B
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3vr4f1, d3vr4f2, d3vr4f3
  • Chain 'G':
    Compound: V-type sodium ATPase subunit D
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpD
    Database cross-references and differences (RAF-indexed):
    • PDB 3VR4
    Domains in SCOPe 2.06: d3vr4g_
  • Chain 'H':
    Compound: V-type sodium ATPase subunit G
    Species: ENTEROCOCCUS HIRAE [TaxId:1354]
    Gene: ntpG
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, CL, B3P, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3vr4D (D:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >3vr4D (D:)
eyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegtsgi
nlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpiardy
pdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavvfaa
igitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekgmhv
lvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtqipi
ltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagktre
dhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytnrti
tetldlgwellamlprtelkrikddlldkylp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3vr4E (E:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >3vr4E (E:)
eyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegtsgi
nlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpiardy
pdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavvfaa
igitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekgmhv
lvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtqipi
ltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagktre
dhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytnrti
tetldlgwellamlprtelkrikddlldkylp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3vr4F (F:)
gssgssgmikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkam
vqifegtsginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekylding
evinpiardypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvlds
sddfavvfaaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaae
ylayekgmhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirg
lkgsvtqipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkd
kgtgagktredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyv
nqgfytnrtitetldlgwellamlprtelkrikddlldkylpegk

    Sequence, based on observed residues (ATOM records): (download) 
    >3vr4F (F:)
mikeyrtikevvgplmavekvsgvkyeelievrmqngeirrgqvlevqedkamvqifegt
sginlknssvrflghplqlgvsedmigrvfdglgrpkdngpeilpekyldingevinpia
rdypdefiqtgisaidhlntlvrgqklpvfsgsglphkelaaqiarqatvldssddfavv
faaigitfeeaeffmedfrqtgaidrsvmfmnlandpaieriatprmaltaaeylayekg
mhvlvimtdmtnyaealreisaarrevpgrrgypgylytnlatlferagrirglkgsvtq
ipiltmpeddkthpipdltgyitegqiiltrelyksgiqppidvlpslsrlkdkgtgagk
tredhaatmnqlfaayaqgkqakelavvlgesalsdidkiyakfaerfeneyvnqgfytn
rtitetldlgwellamlprtelkrikddlldkylp

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3vr4G (G:)
gssgssgmrlnvnptrmeltrlkkqlttatrghkllkdkqdelmrqfillirknnelrqa
ieketqtamkdfvlakstveeafidellalpaenvsisvveknimsvkvplmnfqydetl
netpleygylhsnaeldrsidgftqllpkllklaevektcqlmaeeiektrrrvnaleym
tipqleetiyyikmkleeneraevtrlikvknmgtee

    Sequence, based on observed residues (ATOM records): (download) 
    >3vr4G (G:)
nptrmeltrlkkqlttatrghkllkdkqdelmrqfillirknnelrqaieketqtamkdf
vlaksveeafidellalenvsisvveknimsvkvplmnfqnaeldrsidgftqllpkllk
laevektcqlmaeeiektrrrvnaleymtipqleetiyyikmkleeneraevtrlikvkn
m

  • Chain 'H':
    No sequence available.