PDB entry 3vht
View 3vht on RCSB PDB site
Description: Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
Class: fluorescent protein/protein binding
Keywords: GREEN FLUORESCENT PROTEIN, FUSION PROTEIN, ZINC FINGER, UBIQUITIN-BINDING DOMAIN, FLUORESCENT PROTEIN-PROTEIN BINDING complex
Deposited on
2011-09-06, released
2012-10-10
The last revision prior to the SCOPe 2.03 freeze date was dated
2012-10-10, with a file datestamp of
2012-10-05.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.194
AEROSPACI score: 0.34
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Green fluorescent protein
Species: Aequorea victoria [TaxId:6100]
Gene: GFP
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3vhta_ - Chain 'B':
Compound: Green fluorescent protein, ATPase WRNIP1
Species: Aequorea victoria, Homo sapiens [TaxId:6100, 9606]
Gene: GFP, WHIP, WRNIP1
Database cross-references and differences (RAF-indexed):
- PDB 3VHT
- Uniprot Q96S55 (Start-272)
- Chain 'C':
Compound: Ubiquitin
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3vhtc_ - Heterogens: ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3vhtA (A:)
gshmskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpw
ptlvttfgygvqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegd
tlvnrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvq
ladhyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagitgs
Sequence, based on observed residues (ATOM records): (download)
>3vhtA (A:)
mskgeelftgvvpilveldgdvnghkfsvsgegegdatygkltlkficttgklpvpwptl
vttfgygvqcfarypdhmkqhdffksampegyvqertiffkddgnyktraevkfegdtlv
nrielkgidfkedgnilghkleynynshnvyimadkqkngikvnfkirhniedgsvqlad
hyqqntpigdgpvllpdnhylstqsalskdpnekrdhmvllefvtaagitg
- Chain 'B':
No sequence available.
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>3vhtC (C:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg