PDB entry 3vdr

View 3vdr on RCSB PDB site
Description: Crystal structure of D-3-hydroxybutyrate dehydrogenase, prepared in the presence of the substrate D-3-hydroxybutyrate and NAD(+)
Class: oxidoreductase
Keywords: nad dependent enzymes, ketone bodies, oxidoreductase
Deposited on 2012-01-06, released 2012-02-08
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-02-08, with a file datestamp of 2012-02-03.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.176
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-3-hydroxybutyrate dehydrogenase
    Species: Alcaligenes faecalis [TaxId:511]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vdra_
  • Chain 'B':
    Compound: D-3-hydroxybutyrate dehydrogenase
    Species: Alcaligenes faecalis [TaxId:511]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vdrb_
  • Chain 'C':
    Compound: D-3-hydroxybutyrate dehydrogenase
    Species: Alcaligenes faecalis [TaxId:511]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vdrc_
  • Chain 'D':
    Compound: D-3-hydroxybutyrate dehydrogenase
    Species: Alcaligenes faecalis [TaxId:511]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vdrd_
  • Heterogens: CA, CL, NAD, NAI, 3HR, AAE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vdrA (A:)
    mlkgkkavvtgstsgiglamatelakagadvvingfgqpediererstleskfgvkayyl
    nadlsdaqatrdfiakaaealggldilvnnagiqhtapieefpvdkwnaiialnlsavfh
    gtaaalpimqkqgwgriiniasahglvasvnksayvaakhgvvgltkvtalenagkgitc
    naicpgwvrtplvekqieaisqqkgidieaaarellaekqpslqfvtpeqlggaavflss
    aaadqmtgttlsldggwtar
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vdrB (B:)
    mlkgkkavvtgstsgiglamatelakagadvvingfgqpediererstleskfgvkayyl
    nadlsdaqatrdfiakaaealggldilvnnagiqhtapieefpvdkwnaiialnlsavfh
    gtaaalpimqkqgwgriiniasahglvasvnksayvaakhgvvgltkvtalenagkgitc
    naicpgwvrtplvekqieaisqqkgidieaaarellaekqpslqfvtpeqlggaavflss
    aaadqmtgttlsldggwtar
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vdrC (C:)
    mlkgkkavvtgstsgiglamatelakagadvvingfgqpediererstleskfgvkayyl
    nadlsdaqatrdfiakaaealggldilvnnagiqhtapieefpvdkwnaiialnlsavfh
    gtaaalpimqkqgwgriiniasahglvasvnksayvaakhgvvgltkvtalenagkgitc
    naicpgwvrtplvekqieaisqqkgidieaaarellaekqpslqfvtpeqlggaavflss
    aaadqmtgttlsldggwtar
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vdrD (D:)
    mlkgkkavvtgstsgiglamatelakagadvvingfgqpediererstleskfgvkayyl
    nadlsdaqatrdfiakaaealggldilvnnagiqhtapieefpvdkwnaiialnlsavfh
    gtaaalpimqkqgwgriiniasahglvasvnksayvaakhgvvgltkvtalenagkgitc
    naicpgwvrtplvekqieaisqqkgidieaaarellaekqpslqfvtpeqlggaavflss
    aaadqmtgttlsldggwtar