PDB entry 3vdq

View 3vdq on RCSB PDB site
Description: Crystal structure of alcaligenes faecalis D-3-hydroxybutyrate dehydrogenase in complex with NAD(+) and acetate
Class: oxidoreductase
Keywords: nad dependent enzyme, hydroxybutyrate dehydrogenase, ketone bodies, oxidoreductase
Deposited on 2012-01-06, released 2012-02-29
The last revision prior to the SCOPe 2.07 freeze date was dated 2012-02-29, with a file datestamp of 2012-02-24.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.19
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-3-hydroxybutyrate dehydrogenase
    Species: Alcaligenes faecalis [TaxId:511]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vdqa_
  • Chain 'B':
    Compound: D-3-hydroxybutyrate dehydrogenase
    Species: Alcaligenes faecalis [TaxId:511]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vdqb_
  • Chain 'C':
    Compound: D-3-hydroxybutyrate dehydrogenase
    Species: Alcaligenes faecalis [TaxId:511]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vdqc_
  • Chain 'D':
    Compound: D-3-hydroxybutyrate dehydrogenase
    Species: Alcaligenes faecalis [TaxId:511]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3vdqd_
  • Heterogens: ACT, CL, NAD, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vdqA (A:)
    mlkgkkavvtgstsgiglamatelakagadvvingfgqpediererstleskfgvkayyl
    nadlsdaqatrdfiakaaealggldilvnnagiqhtapieefpvdkwnaiialnlsavfh
    gtaaalpimqkqgwgriiniasahglvasvnksayvaakhgvvgltkvtalenagkgitc
    naicpgwvrtplvekqieaisqqkgidieaaarellaekqpslqfvtpeqlggaavflss
    aaadqmtgttlsldggwtar
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vdqB (B:)
    mlkgkkavvtgstsgiglamatelakagadvvingfgqpediererstleskfgvkayyl
    nadlsdaqatrdfiakaaealggldilvnnagiqhtapieefpvdkwnaiialnlsavfh
    gtaaalpimqkqgwgriiniasahglvasvnksayvaakhgvvgltkvtalenagkgitc
    naicpgwvrtplvekqieaisqqkgidieaaarellaekqpslqfvtpeqlggaavflss
    aaadqmtgttlsldggwtar
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vdqC (C:)
    mlkgkkavvtgstsgiglamatelakagadvvingfgqpediererstleskfgvkayyl
    nadlsdaqatrdfiakaaealggldilvnnagiqhtapieefpvdkwnaiialnlsavfh
    gtaaalpimqkqgwgriiniasahglvasvnksayvaakhgvvgltkvtalenagkgitc
    naicpgwvrtplvekqieaisqqkgidieaaarellaekqpslqfvtpeqlggaavflss
    aaadqmtgttlsldggwtar
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3vdqD (D:)
    mlkgkkavvtgstsgiglamatelakagadvvingfgqpediererstleskfgvkayyl
    nadlsdaqatrdfiakaaealggldilvnnagiqhtapieefpvdkwnaiialnlsavfh
    gtaaalpimqkqgwgriiniasahglvasvnksayvaakhgvvgltkvtalenagkgitc
    naicpgwvrtplvekqieaisqqkgidieaaarellaekqpslqfvtpeqlggaavflss
    aaadqmtgttlsldggwtar